Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  269 bits (688), Expect = 1e-76
 Identities = 154/419 (36%), Positives = 233/419 (55%), Gaps = 16/419 (3%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           KF D  + P ++  LE KG+   T IQA A+P +L G+D+ G AQTGTGKT AF      
Sbjct: 2   KFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPIIQ 61

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           H+   P A      + R++I+ PTRELAIQI  + +    +T +   + +GG     Q+A
Sbjct: 62  HIHEAPYAN-EPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA 120

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ GV IL+ T GR++D   Q   +L  I   VLDEADRM D+GFI DI+ L + +P  
Sbjct: 121 QLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILP-- 178

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K R ++ FSAT+   + +L+ E ++NP+ V V P   T   IQ+ ++Y +   K +LL  
Sbjct: 179 KKRQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIH 238

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           ++E+E  D+ ++F+ TKH  ++I   L   + +   + GD  Q +R+R+L  F    + +
Sbjct: 239 ILEKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRV 298

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATD+AARG+ I ++ +V N+D+PD  E Y+HRIGR+GRAG  G +IS    E   ++ 
Sbjct: 299 LVATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVK 358

Query: 370 AIESYI--------EHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG 420
           AIE           +H  P +D   +A               Q+R+     +R  N GG
Sbjct: 359 AIEKLANKNITVISDHPFPQTDKPMTA-----QEKKEFNKEKQRRKQEFFANRKKNRGG 412