Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  258 bits (659), Expect = 3e-73
 Identities = 162/452 (35%), Positives = 234/452 (51%), Gaps = 37/452 (8%)

Query: 15  GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74
           GL   ++  L   G+   TPIQ  A+P +++G+D+ G AQTGTGKT AF     + L   
Sbjct: 2   GLNKALLQALASTGYTKPTPIQEKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRL--- 58

Query: 75  PAAEGRAETQPRA---IIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKL 131
             AE R   +PR    ++++PTRELA QI +  +   A  G + A+ +GG  Y  Q   L
Sbjct: 59  --AENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGGQERAL 116

Query: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191
           Q G+DIL+   GR++D  +Q+  +L+  +  VLDEAD+M DLGFIK IR +  ++P    
Sbjct: 117 QQGLDILVAAPGRLLDHIQQKNLDLSSTEIFVLDEADQMLDLGFIKPIRQIVAKIPAK-- 174

Query: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251
           R N+ FSAT+   + +LA E + +P  V V P+  T  RI + + Y     K ALL  + 
Sbjct: 175 RQNLFFSATMPSEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVYIEQGRKRALLTEMF 234

Query: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311
            +    R ++F  TKH  +++ A+L A     G + G+  Q +RER LE F +G + +LV
Sbjct: 235 SDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLEAFKKGKLRVLV 294

Query: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAI 371
           ATD+AARG+ +  V+HV N++LP   E YVHRIGRT RAG  G ++SF   +    L  I
Sbjct: 295 ATDIAARGIDVDGVSHVVNFELPHVPESYVHRIGRTARAGKDGTAVSFVAGDEMKLLRDI 354

Query: 372 ESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRR--TNTAGSRNSN------------ 417
           E      IP  D      L  L A +      ++        G RN              
Sbjct: 355 EKVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGQGRGGRGRRAP 414

Query: 418 -------NGGNRKPQQRR------PRAPRPKK 436
                   GG +  +QRR      P APRP++
Sbjct: 415 HREGVRPEGGGQPHRQRRNRPGETPAAPRPER 446