Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase CrhR from Azospirillum sp. SherDot2

 Score =  270 bits (690), Expect = 7e-77
 Identities = 168/430 (39%), Positives = 231/430 (53%), Gaps = 18/430 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F++ GL P V+  LE   +   TP+Q  A+P  L G+DI   A+TGTGKT AF+      
Sbjct: 3   FSELGLHPLVLKSLEAFEYTVPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPALTR 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
               P         PR +++APTRELA Q+ + A        L      GG  Y +QL  
Sbjct: 63  TAELPL---NGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRL 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L   VD+L+ T GR++D   +R  +L+ ++ ++LDEADRM D+GF+ D+  + +  P   
Sbjct: 120 LSRPVDVLVCTPGRLLDHVARRRISLDEVEVLILDEADRMLDMGFLDDVETIAKCCPPT- 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN-EHKMALLQT 249
            R  MLF+ATL  R+ +LA   + NPE V VE  Q T   +++ L +  + +HK  LLQ 
Sbjct: 179 -RQTMLFTATLDRRMAQLAGNLLRNPERVAVE-SQATAINVEQRLHHADDLDHKRRLLQH 236

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
              +E   +AIIFA TK   + +   L+A  H    L GD+ Q KR R L++   G V +
Sbjct: 237 FAAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRL 296

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATDVAARG+ +  +THV N+DLP   EDYVHRIGRTGRAGASG +ISFA       L 
Sbjct: 297 LVATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLV 356

Query: 370 AIESYIE-----HAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKP 424
            IE Y +     H +P    +P+   T   A     +    R +  AG     NG ++ P
Sbjct: 357 RIERYTKATLEVHVVP--GLEPTRPFTTGGA--GRPAGRSGRPSGGAGKPWHRNGESKGP 412

Query: 425 QQRRPRAPRP 434
               PR PRP
Sbjct: 413 --HAPRGPRP 420