Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Cold-shock DEAD box protein A from Alteromonas macleodii MIT1002

 Score =  267 bits (682), Expect = 8e-76
 Identities = 144/357 (40%), Positives = 214/357 (59%), Gaps = 10/357 (2%)

Query: 4   THITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF 63
           T   +  F D  L   ++  LEK G+   +PIQA ++P+LL G D+ GQAQTGTGKT AF
Sbjct: 2   TTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAF 61

Query: 64  LTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLA-STGLKAALAYGGE 122
                 ++          + +P+ +++APTRELAIQ+    +   + S  +K    YGG+
Sbjct: 62  ALPMLANI-------DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQ 114

Query: 123 SYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFL 182
           SYD Q+ +L+ GV +++GT GRIID  K++  +L+ ++ +VLDEAD M  +GFI D+  +
Sbjct: 115 SYDNQIRQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELI 174

Query: 183 FRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH 242
               PE  +R   LFSAT+   ++++   ++ +P+H+ +  +  T   I++     +  H
Sbjct: 175 LSHAPE--ERQTALFSATMPGPIKKITQRYLKDPKHIKIASKVSTASTIRQRYCQIAPHH 232

Query: 243 KMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQF 302
           K+  L  ++E E  D  IIF  TK    ++   L+A  + V  L GD+PQ  RER +E+ 
Sbjct: 233 KLEALTRIMEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKL 292

Query: 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359
            QG +DILVATDV ARGL + +V+HV NYD+P D E YVHRIGRTGRAG  G +I F
Sbjct: 293 KQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILF 349