Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., ATP-dependent RNA helicase RhlB from Alteromonas macleodii MIT1002

 Score =  557 bits (1436), Expect = e-163
 Identities = 285/431 (66%), Positives = 331/431 (76%), Gaps = 8/431 (1%)

Query: 4   THITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF 63
           TH+T+  F+D  +  +V+D L    F +CTPIQALALP LL G DIAGQAQTGTGKT+AF
Sbjct: 3   THLTDTHFSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAF 62

Query: 64  LTATFNHLLTTPA-AEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGE 122
           L ATF++LL+    A+      PRAIIMAPTRELA+QI+NDA+ L   TGL   L YGGE
Sbjct: 63  LVATFHYLLSKAENADNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGE 122

Query: 123 SYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFL 182
            Y  Q   L+ GVDI+IGTTGRI+D+YKQ VF L +IQ  VLDEADRMFDLGFIKDIRFL
Sbjct: 123 GYQSQRETLEEGVDIIIGTTGRILDYYKQNVFTLKNIQVAVLDEADRMFDLGFIKDIRFL 182

Query: 183 FRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH 242
           FRRMP   +RL+MLFSATLSYRVQELA+EHMNNP HV V PEQ T  R+ +ELFYPS++ 
Sbjct: 183 FRRMPPASERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDD 242

Query: 243 KMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQF 302
           KM LL TL+EEEWP++AI+FANTK+ CE++   L AD HRVGLL+GDVPQKKR  ILE F
Sbjct: 243 KMLLLLTLLEEEWPEKAIVFANTKNSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDF 302

Query: 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACE 362
           T+G++DILVATDVAARGLHI  VTHVFNYDLPDD EDYVHRIGRTGRAG SG +ISFACE
Sbjct: 303 TKGNLDILVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGVAISFACE 362

Query: 363 EYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRT--NTAGSRNSNNGG 420
           +YA+NLPAIE YI+ AIP +DYD SALL D+  P      P++RRT  N   SR  N  G
Sbjct: 363 KYALNLPAIEQYIQKAIPVTDYDRSALLDDVTPP-----KPRRRRTPNNRNSSRRGNGRG 417

Query: 421 NRKPQQRRPRA 431
             KPQ R  RA
Sbjct: 418 RGKPQNRNNRA 428