Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  275 bits (702), Expect = 3e-78
 Identities = 163/417 (39%), Positives = 241/417 (57%), Gaps = 16/417 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F + GL  +++  + + G+   TPIQA A+P+LL G+D+ G AQTGTGKT AF       
Sbjct: 16  FNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 75

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L+    A+  A    R +I+APTREL  QI ++    +  T L+     GG S +KQ  +
Sbjct: 76  LMKQ--ADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQ 133

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ G DIL+ T GR++D   +   +L+ +  +VLDEAD+M DLGFI D+R + R +P PK
Sbjct: 134 LEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVP-PK 192

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH-KMALLQT 249
            R  +LFSAT+   + ELA   + +P  V V P  K   ++++ + + + ++ K  LL+ 
Sbjct: 193 -RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKK 251

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
            + E    R+I+F  TKH  E+++ HL     +V  + G+  Q +RER L+ F  G++ +
Sbjct: 252 SLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKV 311

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATDVAARG+ IP VTHVFNYDLP+  + YVHRIGRT RAG  G +I+F   +    L 
Sbjct: 312 LVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLH 371

Query: 370 AIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQ 426
            IE  ++  IP +         + PA L+  + P     N  G RN+N G  R P++
Sbjct: 372 DIEKLMKIDIPVAS-------GERPAGLASPTRP----NNNRGGRNNNGGQPRGPRE 417