Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  259 bits (662), Expect = 1e-73
 Identities = 162/427 (37%), Positives = 234/427 (54%), Gaps = 20/427 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+D GL  +V+  +   G+   TPIQA A+P  L  +DI G AQTGTGKT +F+      
Sbjct: 4   FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLP---- 59

Query: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            + T   +GRA  + PR +I+ PTRELA Q+  + E    +  L  AL  GG S++ Q  
Sbjct: 60  -MLTLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDR 118

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ G D+LI T GR++D  ++    +  ++ +V+DEADRM D+GFI DI  + + +P  
Sbjct: 119 KLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFT 178

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNE--HKMALL 247
           +  L   FSAT+   +Q+LA   + NP  + V     T   + + +    N+   K A+L
Sbjct: 179 RQTL--FFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVL 236

Query: 248 QTLIEEEWPD--RAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQG 305
           + L+  E  +   AIIF N K     ++  L      VG L GD+ Q+ R  +L+ F  G
Sbjct: 237 RDLVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDG 296

Query: 306 DVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYA 365
            + +LVA+DVAARGL IP V+HVFN+D+P   EDYVHRIGRTGRAG SG + +   +  A
Sbjct: 297 QLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDA 356

Query: 366 INLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQ 425
             L AIE  I   I     D    L+ LPAP+    S   RR    G++  +  G  + +
Sbjct: 357 KYLDAIEKLIAEKIEWLSGD----LSSLPAPMESFESNSGRR----GTKERSGRGRDRNR 408

Query: 426 QRRPRAP 432
           +  P +P
Sbjct: 409 RDAPASP 415