Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1167 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  805 bits (2078), Expect = 0.0
 Identities = 478/1172 (40%), Positives = 703/1172 (59%), Gaps = 46/1172 (3%)

Query: 1    MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLANW--RPWIYSLSIAVYCTSWTFYGTVGQ 58
            +Q  +VI V+LAY+G+LF IA YGDR          RP IYSLS+AVYCTSWTF+G+VG 
Sbjct: 2    LQASVVIFVALAYIGLLFAIASYGDRLRPGAGRGAARPMIYSLSLAVYCTSWTFFGSVGL 61

Query: 59   ASVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVT 118
            A+   + FL IY+ PI++   G  +  R++ +AK  +ITS+ADFIAARYGK+QG+A  V 
Sbjct: 62   ATTQGFDFLTIYLGPIILMTVGAPLFLRVVRLAKANNITSIADFIAARYGKNQGIAALVA 121

Query: 119  VIAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQE--SHVSWFVVLALALFTMLFGTR 176
            ++A++  +PYI+LQL+ ++  L  +       +G       ++ FV  A+A F +LFGTR
Sbjct: 122  IVAIIAAIPYISLQLKAVSASLVALLGHFAGEHGRGTLVGDLALFVACAMAAFAILFGTR 181

Query: 177  HIDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG--------LELSTIAAST 228
            H D TEH  G+M+AIA ES+VKL AFL VG+ + ++ +  DG         E S +A   
Sbjct: 182  HTDATEHQNGLMLAIATESLVKLAAFLGVGLLVTFVIF--DGPFSLWYAAREASAVAPFE 239

Query: 229  --YQAPNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFV 286
                  NW T+   T+L+  A + LPRQFH  VVEN+   ++  ARWLFP+YL+L++LFV
Sbjct: 240  RGLSLENWLTM---TILSGGAFMLLPRQFHVAVVENKGESEIRRARWLFPLYLVLINLFV 296

Query: 287  LPIAWTGQGLLPNT--SPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIM 344
            +P+A  G  L P      D +V+++P+ AG   +ALLAF+GG SAA+ MVIV  +A+AIM
Sbjct: 297  VPLALAGMTLFPLNLVDSDVYVLAVPLAAGFDSLALLAFVGGLSAATAMVIVECVAIAIM 356

Query: 345  VSNDLVMPLLLRRMRLSQR--THRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSA 402
            VSNDLVMPL+LRR             +GLL+++RR  I  ++  A+ +Y        L+ 
Sbjct: 357  VSNDLVMPLVLRRRAAKPEGEPREDMTGLLLMVRRISIFAIVLLAYLYYRTTGEA-QLAQ 415

Query: 403  IGFLSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNV 462
            IG LSF+AI Q  PA   G+ W+     G   G+ VG   W  TLM  +   AG  S  V
Sbjct: 416  IGLLSFAAIAQVGPAFAAGLIWQRATAAGAIAGIVVGGATWAYTLMMPSLAEAGLISAGV 475

Query: 463  LL-----WVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFV 517
            L        +  P  L+ L       G+  S+ LNTL  + VS +TR S  ER QA  F 
Sbjct: 476  LQNGPFGISLLRPTALLGLTAGPLAHGVAWSLGLNTLALVIVSFLTRPSQIERTQARLFA 535

Query: 518  GTP--LPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASS 575
            GT    P       ++S V++GEL     R++G  R R AF  Y  Q    L  +++A +
Sbjct: 536  GTGDRPPARPAFLRWRSSVSLGELMATVERYLGAERARAAFDSYARQHGFALDTHREADA 595

Query: 576  ALIRHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIE 635
             ++RH E +LA   GA+S++LVL+  L+ R +  +    ++D+AS    ++R LLQ AI+
Sbjct: 596  GMVRHAEHLLASAVGAASSRLVLSLLLRKRAVSTKAALKLLDDASAAIQYNRELLQSAID 655

Query: 636  HIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPE-- 693
            H+ QGIAV D+ LRLV WN+++ ++ + P     VG P+ D++          P D +  
Sbjct: 656  HVRQGIAVFDRDLRLVCWNRQFGQMLDLPGECYAVGVPLTDILA-------AAPADEDVA 708

Query: 694  DHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMA 753
              +  RV          S R+   G VIE + +PMP GG  ++FTDIT   EA  +L+ A
Sbjct: 709  GDISARVARYVTPDPDFSERLHQRGAVIEARSDPMPDGGIAVTFTDITASVEAALALERA 768

Query: 754  NETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASS 813
            NETLE+RV +RT ELE+LN  L  A   ++  + SK+RFLAA SHD++QPLNAARL+A+S
Sbjct: 769  NETLEKRVRERTEELERLNGALELAKAEADEANLSKTRFLAAASHDILQPLNAARLYATS 828

Query: 814  LSEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNA 873
            + E AK +E ++LA +I+++L + E+++  LLDISRL+SG +     +F I DVL  L  
Sbjct: 829  MVERAKGSEEERLAGNIDASLESVEEILGALLDISRLDSGVMRPEFSAFRIADVLKPLET 888

Query: 874  EFSALAAKQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQ 933
            EF+ LA ++ ++ + +P  L V SD +LLRR++QN ++NA +Y   G++++G RRV  G+
Sbjct: 889  EFAPLAREKNLELTFLPCSLAVRSDRRLLRRLLQNLVSNAVKYTQRGRILVGCRRVG-GK 947

Query: 934  VRIDVWDNGIGIEQDKQQEIFEEFNRGGQ-VRSDQGLGLGLAISKGIAHVLGHHISMRSW 992
            +R++V+D G+GI + K + +F+EF R  Q  ++ +GLGLGL+I + IA VL H +++RS 
Sbjct: 948  LRVEVYDTGVGIPRSKHKLVFQEFQRLDQGAKAARGLGLGLSIVERIARVLEHPVALRST 1007

Query: 993  PGQGSVFSITLDRAQPMPSSLTQTVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERW 1052
             G+GS F++ L  A  MP    +       +G++L  L +L +DNEP IL GM+ LL  W
Sbjct: 1008 HGKGSAFTVELPVAVSMPEE-REAAPSPARRGAQLDGLTILAIDNEPTILEGMQMLLTGW 1066

Query: 1053 GCEVKTATDIHGSLKAL-EGQWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIIS 1111
            GC+V TA +  G+++A+   +  PDV L DY LD G  G+E +   R +LG     V+I+
Sbjct: 1067 GCDVITAANAQGAIEAVRHRRKKPDVALVDYHLDGGH-GIEAIMSLRWKLGK-IPAVLIT 1124

Query: 1112 ADRNPDILDGIESSGFRFMAKPIKPLKLRALL 1143
            ADR+  + D   ++    + KP+KP  LRA+L
Sbjct: 1125 ADRSKKVRDAARAADMEILNKPLKPAALRAIL 1156