Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1171 a.a., Signal transduction histidine-protein kinase BarA from Alteromonas macleodii MIT1002

 Score =  645 bits (1665), Expect = 0.0
 Identities = 406/1208 (33%), Positives = 655/1208 (54%), Gaps = 114/1208 (9%)

Query: 4    WLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVNP 63
            W V  +   YL  LF +A++GD++ R      P +YSL + V+CTSW F+GT  QA+   
Sbjct: 5    WTVGTIVGCYLLALFALAFWGDKRLRDNRQ-HPILYSLGLGVHCTSWAFFGTTSQAAQYG 63

Query: 64   WSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAVL 123
            W+ +P Y+  +L   F + V+  +  + ++ +I+SLAD I+ +Y  S  +A  +T++   
Sbjct: 64   WAVIPTYLGIMLTMAFAFPVVLHISRLCQQHNISSLADLISLKYQHSHLIAALITLLCFF 123

Query: 124  GILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTEH 183
            G++PYIALQL  IT  +N++  D  T   +    +S +V + LALF ++FGTR ++ T+ 
Sbjct: 124  GVVPYIALQLDAITKSINLLTDDAHTSTPW----LSIYVAILLALFAIIFGTRTLNLTDK 179

Query: 184  HRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG-LELSTIAASTYQAPN--------W 234
            H G+++ IAFES++KLVA   VGVF+ +  +  DG L+L + AAS   A          W
Sbjct: 180  HPGLLLTIAFESVIKLVALCAVGVFVCFYLF--DGVLDLVSNAASNASAREVIYADSAPW 237

Query: 235  PTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQ 294
               + H +L + ++  LPRQFH   VE     +L TARWLFP+YL  M+LF++PIA  G+
Sbjct: 238  -VYVSHVVLGVCSMFVLPRQFHMNFVEQNGEGELRTARWLFPLYLFGMTLFIIPIALAGK 296

Query: 295  GLLP-NTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPL 353
             LLP +TS D +V++LP++A    ++  AF+GG SA + MVIV+T+AL IM+SN++V PL
Sbjct: 297  MLLPVDTSSDAYVLALPLYAENIALSSFAFIGGLSATTSMVIVATLALGIMISNNVVTPL 356

Query: 354  LLR-RMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAIT 412
             L+ R++ S       + +L + R T++++L    W ++L +     L   G ++ + + 
Sbjct: 357  WLKARLKTSPNRSMQPNKILSIRRITVVVVLSIALW-YHLNISQAAPLVKSGVIAIALLA 415

Query: 413  QFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPPDW 472
            Q  PA+  G+YW + N+      L VGFT W   L+  + + +         +   P   
Sbjct: 416  QCMPALMFGLYWTKSNKAAAICALLVGFTCWAAFLLYPSLLSS---------YYFNPAPT 466

Query: 473  LVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQS 532
              ALGL     G   S+  N L ++ V+L+T        +      T L +++   L   
Sbjct: 467  DQALGL-----GFAFSLLANCLTFVTVALITSR------RGTKPNNTLLTDHDTPRLL-- 513

Query: 533  RVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFGAS 592
             V V +L  L  R +  +   +   +  S        +  AS ALI    ++LA   GA 
Sbjct: 514  -VKVRDLIALTERVL-ESATHSQLVKQLSVDVNRAASSGYASQALIDRVNKLLAAQVGAP 571

Query: 593  SAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVA 652
            SA+++L +          E+   V+EAS+ + F+  +LQ ++++I QGI+V+D +L+L+A
Sbjct: 572  SARILLGAIADTGSDSFPELVDWVEEASQSFQFNHEVLQSSVQNIEQGISVLDDKLQLLA 631

Query: 653  WNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSS 712
            WN+RY+ELF +P G ++ G PI D++ +NA +GL  P      + +RV ++ +GT H   
Sbjct: 632  WNERYVELFAYPKGFLKAGMPITDILSYNANRGLFSPSS----IEKRVSYMLEGTRHKHI 687

Query: 713  RVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLN 772
            R + DG+VIE+ G P+PGGG+V +++DIT +   ++ L+ A E LE RV QRT ELE+  
Sbjct: 688  RKQPDGKVIELNGAPLPGGGYVTTYSDITEYIAIQKELESAKEDLEARVAQRTAELEE-- 745

Query: 773  KQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIES 832
                 A Q +++ ++SK++FLAA  HDLMQP NAA LFAS LS+  + +E+  L+  + +
Sbjct: 746  -----AKQHADKANESKTKFLAAAGHDLMQPFNAATLFASMLSKKTQGSELATLSEGVVN 800

Query: 833  ALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSL 892
            +L  A+ L+S LLD+++L++G +      F + D+LS+L  EFS +A ++G++   VP+ 
Sbjct: 801  SLDNAQSLLSMLLDMTKLDAGVLTPQKTEFPVSDMLSSLVQEFSVIAKQKGIELRYVPTR 860

Query: 893  LWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQ----VRIDVWDNGIGIEQD 948
            + V+SD  LLRRV+QN L+NA RY   G++++GVRR         +++ V+D G+GI   
Sbjct: 861  VMVYSDKVLLRRVLQNLLSNAVRYTAKGRILVGVRRTRVTNTEQVIKLCVYDTGLGIADH 920

Query: 949  KQQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQP 1008
            +Q EIF EF++       +G+GLGL I   I  +LGH + + S P +GS FS+ + RA  
Sbjct: 921  QQHEIFSEFHQLESNNKGEGIGLGLTIVDKICRLLGHEVGLTSSPNKGSCFSVAVSRAFQ 980

Query: 1009 MPSSL-TQTVAMVNEKGSE----------------------------------------- 1026
              +S+ T  V+  N   S                                          
Sbjct: 981  SEASIPTAHVSNTNHVDSPFNNSVLTKNSASAPNNSVSVQKSALDSRSRPVSSHSHQMPS 1040

Query: 1027 -----------LQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIP 1075
                       L+  R L V+N+  +   M  LL  WG    T     G+  +   Q   
Sbjct: 1041 LDSANKNNNAFLKDTRFLLVENDEQVANAMCTLLRDWG--GSTTLIAGGAEVSSISQEHF 1098

Query: 1076 DVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIK 1135
            DV+++DY L+ G TG +V              ++++A+R+ DI +      F ++ KP+K
Sbjct: 1099 DVLVADYHLNYGETGFDVAAILSENNVSFALKILVTANRSNDIREEAAEQQFSYLPKPLK 1158

Query: 1136 PLKLRALL 1143
            P  L+ LL
Sbjct: 1159 PAALKRLL 1166