Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., cyclic nucleotide-binding protein from Pseudomonas simiae WCS417

 Score =  179 bits (455), Expect = 2e-49
 Identities = 147/629 (23%), Positives = 263/629 (41%), Gaps = 39/629 (6%)

Query: 4   KFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRD-VLIDAQHPVTHLHILIKGTVEERSPD 62
           +F  + PPFN++       L     + ++   D +L  +  PV H +I+ +G V    PD
Sbjct: 24  QFLQRFPPFNQMENAHLAFLVEQCQLRFYGPGDSILKPSGGPVEHFYIVKQGRVVGERPD 83

Query: 63  GKEVFAHYANDDLFDVRAMF-EELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFD 121
             E        + F + A+  E  ++ ++ A EDT    L K  F++L+  +  F  +  
Sbjct: 84  SAETTFEITTGECFPLAALLGERATRTEHKAAEDTFCLQLNKPAFIKLFALSSPFRDFAL 143

Query: 122 NNLAKRQELIEAAAQQKNIAEF-----ILTKVDRSIYHPPFILSPEQPIHSVTQQLKERG 176
             ++   + +    QQK +        + T++       P   SP  P+      + E+ 
Sbjct: 144 RGVSSLLDQVNQQVQQKAVETLGTQYSLNTRLGELAMRHPVTCSPATPLREAVTLMHEQQ 203

Query: 177 IDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEG 236
           + + ++               P  I T  ++   V         P+    T     +   
Sbjct: 204 VGSIVI---------VDELKAPLGIFTLRDLRQVVADGTSDFSQPIEGHMTQAPFFLTPD 254

Query: 237 DFLFNAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELA 296
              F+A + MT + I  V +    +  G++S   + S        L   I  A  +D L 
Sbjct: 255 HSAFDAAIAMTERHIAHVCLVKDQRLCGVVSERDLFSLQRVDLVHLARTIRNAPRVDNLV 314

Query: 297 LAANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFELVV-----PPALHDQCCLVV 351
               +  +LVE +++ G  +  +  +I  +N+  + +  EL +     P       C   
Sbjct: 315 AIRGEIGQLVERMLAHGASSTQITHIITLLNDHTVCRVIELTLAEKGDPGVPFSWLCF-- 372

Query: 352 LGSEGRGEQILKTDQDNALII--QDGLEWHQCQ----PIMETLTHTLLQLGYPLCPGKVM 405
            GSEGR EQ L TDQDN ++   +D  E    +    P+ + +  +L   G+ LC G +M
Sbjct: 373 -GSEGRREQTLYTDQDNGILFDAKDAAEAAAIRGRLLPLAQQINQSLALCGFSLCKGNIM 431

Query: 406 VNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMA 465
             NP+   S+++W R    +++ A PE ++  +I+ D   V G+      ++  +   +A
Sbjct: 432 AGNPELCLSRAEWARRFAAFIREATPENLLGSSIYFDLRVVWGDERGCEQLRQTILDQVA 491

Query: 466 GQELILAEFTRPALNFSVPLTLFGNVKSSKQG-----IDIKQGGIFPIVHGVRALSLEHA 520
              L        AL    P+  F     +++G     +D+K  G+ P V G R L+L + 
Sbjct: 492 DNRLFQRMLAENALRQRPPVGRFREFVLTRKGGEKATLDLKVQGLTPFVDGARLLALANG 551

Query: 521 IDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRL----AQQLGNQHSTNQLDFKQ 576
           I ANNT +R+  LV K V+E   G    EA+    + R+     Q   NQ  +N++D   
Sbjct: 552 IHANNTLERLRQLVVKEVIEPLDGAAYEEAYHFIQQTRMQQHQLQSRENQPYSNRVDPDS 611

Query: 577 LDRTERDLLRHSLHVVKKFKQWLGYHYQI 605
           L+  +R +LR SL   ++ +  L   YQ+
Sbjct: 612 LNHLDRRILRESLRQAQRLQSSLTLRYQL 640