Pairwise Alignments

Query, 209 a.a., 3'-5' exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., DNA repair nuclease with dnaQ and GIY-YIG domains (from data) from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 18/178 (10%)

Query: 30  YVSLDCETTSLDPKRAELVTIA-----ATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIH 84
           Y  +D ETT   P + ++  IA       KIVD        +   +   + +     ++ 
Sbjct: 2   YAIVDIETTGGQPHQDKITEIAIFIHDGEKIVDK-------YHTLINPERPIPYFITQLT 54

Query: 85  RIRHQDLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEV 144
            I+   + +     E   +++EF   +  V +++R+D + +       LGF    + +  
Sbjct: 55  GIKDDMVLEAPKFYEVAKEIVEFTEGKVFVAHNVRFDYSFMKKEFAD-LGFTFQRKTLCT 113

Query: 145 SQIYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTKGDLP 202
                 +L + L       SL  +C  +D+PL  +H A+ DA A AL+F +L K + P
Sbjct: 114 V-----RLSRSLIPGLPSYSLGKLCNSIDIPLSQRHRAIGDAEATALLFDKLIKINRP 166