Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., tRNA-dihydrouridine(20/20a) synthase from Pseudomonas sp. DMC3

 Score = 80.9 bits (198), Expect = 5e-20
 Identities = 73/284 (25%), Positives = 128/284 (45%), Gaps = 26/284 (9%)

Query: 23  VAPMAGVTDRPFRE-LCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQIA 81
           VAPM   TDR  R  L L     +  +EM++    L      +  + H       ++Q+ 
Sbjct: 54  VAPMMDWTDRHCRYFLRLLSKNALLYTEMVTTGALL--NGDHERFLRHNEAEHPLALQLG 111

Query: 82  GSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVNAV 141
           GS P  +A  A+ + E+G   +++N+GCP+ +V   + G+ L+ +P ++ D +KA+ +AV
Sbjct: 112 GSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAV 171

Query: 142 NVPVTLKTR---TGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGEAE------- 191
           ++PVT+K R    G D+  + C        D G  +  +H R          E       
Sbjct: 172 SIPVTVKHRIGINGRDSYAELC-DFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPL 230

Query: 192 -YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 249
            YD    +KA    + ++ NG I + E     L+    D +M+GR A   P++  E+   
Sbjct: 231 RYDVAAQLKADFPELEIVLNGGIKTMEACHEHLQ--TFDGVMLGREAYHNPYLLAEVDQQ 288

Query: 250 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVS 293
           L  G++ P +  +E        +  L  +  E+L    A  H++
Sbjct: 289 L-FGSSAPVISRAEA-------LAQLRPYIAEHLLAGGAMHHIT 324