Pairwise Alignments

Query, 332 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

 Score =  153 bits (387), Expect = 6e-42
 Identities = 104/309 (33%), Positives = 156/309 (50%), Gaps = 13/309 (4%)

Query: 7   ATLQDVADQVGVTKMTVSRYLRSPDS--VAAATREKIALAVEALGYIENRAPAMLSKSSS 64
           ATLQ VAD VGV + TV+R L    S  ++A   EK+       GY  +   + L    S
Sbjct: 15  ATLQSVADAVGVHRSTVARALDPEQSRRISADVVEKVQAEARRQGYRPDAVASSLRTGRS 74

Query: 65  KAIGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLLAYQVDGL 124
           + IG+++P L+N +FA  + GI A   A GY  ++A  G DE  +   +  L+A +VDGL
Sbjct: 75  RLIGVVVPDLANPVFAPILGGIGATLAARGYSMMVADSGEDEAGQADIVEKLIARRVDGL 134

Query: 125 ILTESHHTQRTLQMIASSGVPVVETMELPANPIDMAVGMDHVEASYQAVKKIIAAGKRSI 184
           +L  +     T+ +   +GVP V             V  D       AV  +   G R I
Sbjct: 135 VLATAKRDDATVSLCLKAGVPTVLVNRGEDGLRASTVVSDDTGGIAVAVAHLAGLGHRRI 194

Query: 185 AYFGA--RLDTRTKLRMQGYDQAMQEAGLPIKHVLTGS----HSSFSLAAQLLDEAFARY 238
            +     RL T   LR +G+  AM  AGLP   V T +     +    AA+LLD    R+
Sbjct: 195 GHLAGPERLSTGV-LRRRGFADAMAAAGLPADAVTTATAYNREAGRVAAAELLD----RW 249

Query: 239 PDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYNALDIGRTITPKLTSVDSPRYAI 298
           PD+  +  +ND IA+G    AQQRG+R+P+ LS++G+N + +   + P LT+V     A+
Sbjct: 250 PDITAIAASNDLIALGAYQEAQQRGLRIPQDLSIVGHNDMPLVDMVAPPLTTVRIGHEAM 309

Query: 299 GEKSAELLI 307
           G ++A +L+
Sbjct: 310 GARAASILL 318