Pairwise Alignments

Query, 332 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  156 bits (394), Expect = 8e-43
 Identities = 105/324 (32%), Positives = 167/324 (51%), Gaps = 16/324 (4%)

Query: 7   ATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALAVEALGYIENRAPAMLSKSSSKA 66
           AT++DVA   G++  TVS  L     V+   R K+  A+  L Y+ +     L   S+  
Sbjct: 2   ATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTAT 61

Query: 67  IGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLLAYQVDGLIL 126
           IG+L+P+  N  FA   +GIE   + NGY  +L +   + +++   +  LL  ++DGL++
Sbjct: 62  IGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVV 121

Query: 127 TESHHTQRTLQMIASSGVP-VVETMELPANPIDMAVGMDHVEASYQAVKKIIAAGKRSIA 185
                    LQ +AS   P V+   EL     D+ V +DH + +Y A + ++  G R +A
Sbjct: 122 ASVGQDDDLLQSLASVRTPMVIVDRELEGVDADL-VRIDHEQGAYLATRHLLELGHRDVA 180

Query: 186 YFGARLDTR-TKLRMQGYDQAMQEAGLPIK-----HVLTGSHSSFSLAAQLLDEAFARYP 239
           Y G   +T  T+LR+ G+ +AM EAG P+      H    S    + AAQ+L+    + P
Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLE---GKRP 237

Query: 240 DLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYNALDIGRTITPKLTSVDSPRYAIG 299
               +F  ND I  G L  A +R I VP +LSVIG++ +++ R + P LT+V      +G
Sbjct: 238 --SAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELG 295

Query: 300 EKSAELLIAALKGER---AEQQVV 320
           E +A LL+  +   R   AEQ++V
Sbjct: 296 ESAASLLLTRIATPRQGAAEQRIV 319