Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  288 bits (737), Expect = 4e-82
 Identities = 185/561 (32%), Positives = 300/561 (53%), Gaps = 27/561 (4%)

Query: 19  LSIRNRLFLLTVVILVLLAIPFAIM------------VKDYRHDLMLEKQVQTQHLVESA 66
           LS++ ++  L VV ++L A+  ++             V++ R  L+ + +   Q  VE A
Sbjct: 3   LSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVA 62

Query: 67  YTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNG 126
            + ++     A  G  T  +AQ    + ++   YG + YF+  D++   +     PD  G
Sbjct: 63  MSTIKPLYDAAAPGD-TAARAQ--VVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVG 119

Query: 127 KDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIG 186
           K  +  +DPNG  +  ++V V +      ++Y   +PG  + V K+ Y +    W  +IG
Sbjct: 120 KSFKDNRDPNGVYVNRDLVKVGKDGTH-YLQYSSTQPGQTELVPKMGYTEYLPKWDMVIG 178

Query: 187 TGIYVDD-------VNALVMQRLSSILVWVVGTLLVLIVLASLIG----RSITQPCEETL 235
           T + +D        V A V +R+  +L+ ++G  +VL+++ + +G     +I +P     
Sbjct: 179 TSVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMK 238

Query: 236 ATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADEL 295
           A L +IA GEGDLTR+L +T +DEL  +A AFN F +KI  ++++IT +T  +TG   ++
Sbjct: 239 ANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQV 298

Query: 296 TQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMI 355
           +  AQ +      Q    D VA+A+NQ+ ++ QEVA+SA  A  AA   +      + ++
Sbjct: 299 SDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVV 358

Query: 356 TLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAG 415
             +  Q+ +L + +  +      L  +  S+ +VL VIR +AEQTNLLALNAAIEAARAG
Sbjct: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418

Query: 416 EQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAE 475
           E GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ   ++  ++M ++      T  QA 
Sbjct: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478

Query: 476 QAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAA 535
           +A   L+ +   I TI S N  IA A+ +Q+   +EI R++ QIA      + +    A 
Sbjct: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538

Query: 536 ASEQLMENGQHLARSLAVFKI 556
            S  L E GQ L + +  F+I
Sbjct: 539 TSRSLAELGQRLGQLVGQFRI 559