Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  243 bits (620), Expect = 1e-68
 Identities = 177/556 (31%), Positives = 283/556 (50%), Gaps = 30/556 (5%)

Query: 14  VSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHL----------V 63
           ++LR LSI  R  L   VI +LL    A       H  + E+ ++   L          +
Sbjct: 1   MNLRSLSISRRASLCFGVITLLLIGLGAFSYVQIGHLRVAEQNIEENSLPSVQVVDDIQI 60

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
              +  LE     A+        A+   ++AI  LR  ++ Y               K  
Sbjct: 61  ALLHARLESIRMLASNDPSVHASAEAKVREAIEALRANSDFY--------------QKHL 106

Query: 124 LNGK-DLRSFKDPNGK-ALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYV-KLFKP 180
           L+G+ D   F++ N K  ++++ +           E        EQ +   +Y  KL   
Sbjct: 107 LSGEADRAQFEEANNKMGVYIDGLKQVVALDSADHERAVSLANGEQALKAAAYQEKLTAL 166

Query: 181 WGWIIGTGIYVD-DVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLK 239
            G      +    D  A+    ++ +++ ++   L+ +VLA  + RSI  P   +L   +
Sbjct: 167 RGHNAEEAVVSGKDATAVYDHSVNVLMIVLIAAFLLTVVLAIALTRSIVDPISASLKLAE 226

Query: 240 NIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVA 299
           +IA G  DLTRQL+V+G DE +++  A N  +  +R  I EI+  +  ++ +A E+T + 
Sbjct: 227 DIAAG--DLTRQLSVSGSDEASRLMTALNTMSGNLRTTIHEISGASAQLSTAAVEMTSIT 284

Query: 300 QSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTS 359
           +SA      Q+  ++  A+A+N++ A+ +EVA++A    QAA  ++ +A  G + +  T 
Sbjct: 285 ESADRTLQQQNSEIEQAATAVNEMSAAVEEVARNATSTSQAAQQSSLSADLGNQRVNETL 344

Query: 360 TQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGR 419
           T MQ+L   +  +  +   LA + Q +S VL VIRG+AEQTNLLALNAAIEAARAGEQGR
Sbjct: 345 TAMQNLTGLVEGSSAQVTALAGQAQDISKVLGVIRGIAEQTNLLALNAAIEAARAGEQGR 404

Query: 420 GFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQ 479
           GFAVVADEVR LA RTQ ST E+EQ+I+ +Q  + +  +SM ++ Q+  VT++ AE A +
Sbjct: 405 GFAVVADEVRALAHRTQTSTQEVEQMISAIQAGSSATVESMHKSTQEVHVTRKTAEDAGE 464

Query: 480 MLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQ 539
            L +I   +  I + N  IA AS QQ+    ++ R+L  I + + Q+S    Q   AS +
Sbjct: 465 SLRQITDSVLEINNRNLQIAAASEQQAHVARDVDRSLVSIRDLAVQSSEGTRQTLIASTE 524

Query: 540 LMENGQHLARSLAVFK 555
           L +   +L   +  FK
Sbjct: 525 LSQLAVNLNDLVLRFK 540