Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  258 bits (659), Expect = 4e-73
 Identities = 171/584 (29%), Positives = 284/584 (48%), Gaps = 83/584 (14%)

Query: 19  LSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQAT 78
           + I  RL+L+    L  +A   A  +    HDLM +++V+T+H+VE   +LL HY +   
Sbjct: 1   MKIAIRLWLIVATALCGIAAVVAASLAQMNHDLMDDREVKTRHIVEVGQSLLSHYEEMER 60

Query: 79  QGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPNGK 138
            G L+ ++AQ  A  A+++LRY   +Y WI+    ++++      L G+ +   KDPNG 
Sbjct: 61  AGRLSRDEAQAAAIAAVSKLRYEGTEYLWIHRLDESVMLSHPNAKLIGQPILDMKDPNGL 120

Query: 139 ALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNALV 198
            LF EM  + +    G V Y WPKPGA +PV K+SYV+ F PWGW+IG+GIY+DDV+A  
Sbjct: 121 FLFREMNRMVKEKSVGFVYYMWPKPGATEPVAKLSYVQGFAPWGWVIGSGIYIDDVSAAF 180

Query: 199 MQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGE------------- 245
             R        +G L ++ ++A+ +GR IT+P  +    L  +   +             
Sbjct: 181 RTRAVEFGAAALGILALVWLIAAWVGRGITRPLGDVTGALDRLTSDDHSVEIRHTGRTDE 240

Query: 246 -GDLTRQLTV----------TGKDELAQ----------IAQAFNLFTNKIRHIIQ----- 279
            G L R L V            +++L Q          IA   + F  K+  +I+     
Sbjct: 241 IGALARGLKVFQTHIEAAARAAEEKLRQQEADLARQSRIAALTSEFDAKVAGVIKSVGAA 300

Query: 280 --EITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQA 337
             ++   ++S++  AD+  + + + ++ A     +V TVA+A  +LHAS  E+A+    +
Sbjct: 301 AAQMQSTSQSMSAIADQTARQSTAVAAAANHAAMSVQTVAAATEELHASEAEIARQVEVS 360

Query: 338 EQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVA 397
              + +A Q A +  E+++                      L S    +  V+ +I  +A
Sbjct: 361 TSRSRTAVQEAERSSEIVS---------------------GLNSAAGRIGEVVALINDIA 399

Query: 398 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKA---- 453
            QTNLLALNA IEAARAGE G+GFAVVA+EV+ LA +T  +T+EI   I ++Q  A    
Sbjct: 400 SQTNLLALNATIEAARAGEAGKGFAVVANEVKNLANQTARATDEISSQIGEVQSAATLAA 459

Query: 454 ---QSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATD 510
               ++  ++ +  + S V     +Q      EI   I+              Q +  T 
Sbjct: 460 EAIAAIVNTIAEIDETSSVVAIAVDQQSAATTEIARSIE--------------QAATGTA 505

Query: 511 EITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVF 554
           E++ N+ ++++ +  A + A++V AA+ +L      L   +  F
Sbjct: 506 EVSNNIGEVSDAARHAGSTASEVLAAAAELTGQADALRTEVEQF 549