Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 576 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  280 bits (716), Expect = 1e-79
 Identities = 170/563 (30%), Positives = 302/563 (53%), Gaps = 30/563 (5%)

Query: 14  VSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHY 73
           +S+ +   R ++FL+ V+ L+ +    A+ + +  ++LM  ++++TQH+VE+A++L+ HY
Sbjct: 15  MSISNWRFRAKIFLIVVLSLLGMGAIVAVNLANLHNELMAARKIKTQHVVETAHSLIGHY 74

Query: 74  AQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFK 133
            + +  G ++T+ AQ  A +AI  +RY   +YFWIN     MV+HP++PD+ GKDL   K
Sbjct: 75  VKLSQSGQMSTDAAQAAAIEAIKTMRYAGTEYFWINSLAGKMVVHPIRPDMLGKDLMGLK 134

Query: 134 DPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDD 193
           DP GK  F  M++V ++++ G V+Y WPKPG +QPV KVSYVK  + WGW++G+GIYVDD
Sbjct: 135 DPAGKLFFEAMIDVVKKDKAGFVDYLWPKPGLDQPVPKVSYVKGIEEWGWLVGSGIYVDD 194

Query: 194 VNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT 253
           V++     + ++   V G +L++++++  IG+++          ++ +A+G+  +  +  
Sbjct: 195 VDSAFRAEVMNLGGIVTGVVLLVLLVSWWIGKNVVDGMRNATGGIRKLAEGDTSVEIKGH 254

Query: 254 VTGKDELAQIAQAFNLF-----------TNKIRHIIQEITPITESVTGSADELTQVAQS- 301
             G DE+ ++ QA  +F             +     Q       ++ G A EL +  +S 
Sbjct: 255 ERG-DEIGELVQAAEIFREHSLTMKRMSEERAEQRRQAEAERRSTLAGLATELERGVKST 313

Query: 302 ---ASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQ----AEQAAHSANQAASQGREM 354
               S  A         +A A++     +Q VA +A Q     E  A +A + +S  R +
Sbjct: 314 VVTVSESAGRMRSTATGMAGAIDNASQESQAVAAAAQQTSSNVEAVAAAAEELSSSIRGI 373

Query: 355 ITLTSTQMQSLR---DQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEA 411
            +  +   Q  +   D   RT+   + L+     +  V+ +I  +A QTNLLALNA IEA
Sbjct: 374 GSQVAESTQIAKEAVDAANRTDGVVRGLSEAADRIGEVVRLINDIAGQTNLLALNATIEA 433

Query: 412 ARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQ 471
           ARAGE G+GFAVVA+EV+ LA++T  +T EI Q IA +Q    + + ++   +   +   
Sbjct: 434 ARAGEAGKGFAVVANEVKHLASQTAKATEEIGQQIASIQ---STTADAVGAIESIGKTIG 490

Query: 472 QQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQAN 531
           +  E A  +   +E Q     +  Q IA    + ++   E++ +++ I+  +++A   A 
Sbjct: 491 RMDEIANAIAEAVEQQ----GAATQEIARNVHEAADGAQEVSHHISSISRTASEAGVAAR 546

Query: 532 QVAAASEQLMENGQHLARSLAVF 554
           ++  A+ +L    + L   +  F
Sbjct: 547 ELLGAAAELAGESETLRNGVDRF 569