Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  276 bits (705), Expect = 2e-78
 Identities = 188/609 (30%), Positives = 298/609 (48%), Gaps = 85/609 (13%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           +++++I  RL+ L  + L +LA      + +   ++  E++     + E+A  +++ Y Q
Sbjct: 1   MKNVTISMRLYALVALFLAILAAALTFSLFESYREMERERKAGLAAMNETAVAIIKQYYQ 60

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYG-ANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKD 134
               G+LT E AQ  AK  IA +RYG  + YFWIND  P MVMHP+KP++NG DL + KD
Sbjct: 61  LEQGGSLTREAAQQQAKTTIAAMRYGNGSGYFWINDMHPTMVMHPIKPEMNGTDLTANKD 120

Query: 135 PNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDV 194
           PNGKALFVE VN  +   QG V+Y WPKPGA  PV+K S+V  F PWGWI+GTG+YVDD+
Sbjct: 121 PNGKALFVEFVNTVKAGGQGFVDYYWPKPGAPDPVEKFSHVAGFAPWGWIVGTGVYVDDL 180

Query: 195 NALVMQ--RLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQL 252
            A+  +    +  L  VVG  L+++ +A+ + RS+T+P +    ++K IA G+G    Q 
Sbjct: 181 EAVFWRDAYFNGGLCVVVG--LLVVGVAAFVVRSVTRPIDLIRQSMKRIADGDGAAEIQF 238

Query: 253 TVTGKDELAQIAQAFNLFTNKI-------------RHIIQEITPITESVTGSAD------ 293
              G DE+  IA+   +  + +             +  ++E     E V  SA       
Sbjct: 239 ADRG-DEIGAIAKTLLVLRDSVNERSALQAREADQQRALEEARHGNEMVLRSASERQAHA 297

Query: 294 ------------------ELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSA- 334
                             EL  +         D ++AV  +  A+  +  + Q V  SA 
Sbjct: 298 MERLGHALEALANGDLTVELADIGSDYEKLRVDFNRAVGALHGAIEAIARTGQVVNDSAS 357

Query: 335 ----------HQAEQAA-----------------HSANQAASQGREMITLTSTQMQSLRD 367
                      + EQ A                  +A++ A++ R+M+  T T      +
Sbjct: 358 DISGATGNLSRRTEQQAAALEETAAALDEITATVRTASERANEARQMVQDTKTSAGRSGE 417

Query: 368 QLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADE 427
            +         +   ++ +  ++ VI  +A QTNLLALNA +EAARAGE GRGFAVVA E
Sbjct: 418 IVRNAVDAMGRIEDSSKRIGQIISVIDEIAFQTNLLALNAGVEAARAGEAGRGFAVVAQE 477

Query: 428 VRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQ 487
           VR LA R+  +  EI+ +I    + A+ V   +       R T    ++   ++N ++  
Sbjct: 478 VRELAQRSANAAKEIKTLI---NRSAEEVGGGVALV----RSTGDALDEIVALVNRVDGH 530

Query: 488 IKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHL 547
           + +       IA A+ +Q+    EI  ++  + + + Q +A   +  AAS+ L E  Q L
Sbjct: 531 VNS-------IATAAREQATGLQEINTSVNHMDQMTQQNAAMVEETTAASQTLAEESQQL 583

Query: 548 ARSLAVFKI 556
              L+ F++
Sbjct: 584 RALLSRFEL 592