Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., putative Gamma-aminobutyrate transporter from Pseudomonas putida KT2440

 Score = 82.4 bits (202), Expect = 3e-20
 Identities = 110/452 (24%), Positives = 189/452 (41%), Gaps = 44/452 (9%)

Query: 2   SSNAKKIGLIACTGVV-AGNMMGSGIALLPSTLASVGSISIYSWLICIVGALSLAFVFAR 60
           S   + I +IA  GV+ AG  MGSG     S +AS G  +I S+ I  +    + F+   
Sbjct: 9   SLKQRHITMIALGGVIGAGLFMGSG-----SLIASAGPAAILSYFIGGLVVTLVMFMLGE 63

Query: 61  LATKNPQEGGPIAYAGE-VSPVFGFQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNNP 119
           +A +NP  G    YA   +    GF  G LY+  + +     A+   + L  F P L  P
Sbjct: 64  MACRNPDAGSFSTYANTYLGDWAGFAVGWLYWFKSMMTITLEAVLLGAILHDFLPWL--P 121

Query: 120 IPAG----LATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVVGTALFGWTHFD---S 172
           I AG    L T+ +   +++ +     +      +  +LI + ++G ++    H D    
Sbjct: 122 IWAGAFLMLVTLMASNAYSVRSFAEVEYWLAAMKVATILIFM-LLGVSILLGLHSDIPAP 180

Query: 173 ALYSQNWNVSAGSDGHA-VITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGL 231
            L +   +     +G + V+  V++ ++S  G E AAV++G  ENP++ V  A       
Sbjct: 181 GLINLTAHDGFMPNGLSPVMAGVIVVIFSLGGSEIAAVAAGESENPRQNVIRAIKSVILR 240

Query: 232 AGLIYVLSTQMISGMFPASEVAASGAPF-ALATTALFGSWTAP-----FVSAFTALACFT 285
             L YV S  ++    P ++ A   +P+ +L + A FG          FVS  + +  F 
Sbjct: 241 VMLFYVGSVSILILCLPWTDKANLASPYVSLFSLAGFGGAAVAMKLVLFVSFMSVMNSFM 300

Query: 286 SLGSWMMLVGEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSET 345
              S M+         +  G+ PK+F  T   GVP   LL++ S+ T+++ V        
Sbjct: 301 FSNSRMLF------SLSQRGHAPKLFSRTSAKGVPINALLLSLSICTMILTV------HF 348

Query: 346 AHASDLFNQLTTDAVLLTMLPYFYSSINLIRFEGMTTR--------NTFVMLFSGIASLF 397
               DLF  L      L M+ + +  I  +     T            ++  ++ I +LF
Sbjct: 349 VSGGDLFMTLAKSTGSLVMVVWIFIIIAHVAMRIKTRHEAVAPNAFRAWLFPYTNIIALF 408

Query: 398 CMVALAGAEGSTLTATFIMSLIILMFYSKKAG 429
            ++A+ G +     + F     +L      AG
Sbjct: 409 ALLAVIGTQAFDPASRFQFWFTVLTVLLVVAG 440