Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., basic amino acid/polyamine antiporter (APA) family transporter from Caulobacter crescentus NA1000 Δfur

 Score =  212 bits (539), Expect = 2e-59
 Identities = 133/408 (32%), Positives = 219/408 (53%), Gaps = 14/408 (3%)

Query: 5   AKKIGLIACTGVVAGNMMGSGIALLPSTLASVGSISIYSWLICIVGALSLAFVFARLATK 64
           +K +G+  C  +V GNM+GSG+ +LP++LA  G  ++ +W++ I G+L LA+VFA+LA  
Sbjct: 11  SKPLGVWMCAALVVGNMIGSGVFMLPASLAPYGWNAVIAWILTIGGSLCLAYVFAKLAGA 70

Query: 65  NPQEGGPIAYAGEV-SPVFGFQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNN-PIPA 122
            P+ GGP AY  E      GF     Y+ + W+ N AIAI  +SYLSVF PV+   P   
Sbjct: 71  FPRAGGPFAYTEEAFGRAPGFLVAWSYWISVWVANAAIAIAAISYLSVFLPVIAKVPALP 130

Query: 123 GLATIASVWLFTLVNLLG---GSWVSRLCTIGLVLILIPVVGTALFGWTHFDSALYSQNW 179
            L T+A VW  T +N  G     W   + T+  ++ LI V G A+        A  +  +
Sbjct: 131 ALLTVAVVWTATAINCAGARSAGWTQVVTTVLKLVPLIAVAGLAVSVLLRKGPAAITP-F 189

Query: 180 NVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGLAGLIYVLS 239
             SA S G ++  A  + LW+ +GVE+A + +  V++P RT+P AT+ GT  AGL+Y++ 
Sbjct: 190 EPSALS-GASITAAAALTLWALLGVETATIPADKVKDPARTIPRATLAGTAFAGLVYLVV 248

Query: 240 TQMISGMFPASEVAASGAPFALATTALFGSWTAPFVSAFTALACFTSLGSWMMLVGEAGK 299
           +  +  + P + +  S APF    +   G      ++AF  ++   +L  W ++ GE   
Sbjct: 249 SSGVLLLTPTAVLQGSNAPFVDFVSYHGGGDFRLALAAFATISALGALNGWSLIQGELPA 308

Query: 300 RAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSETAHASDLFNQLTTDA 359
             A +G FP  F +T  NG P +  L++S ++T+  LVLM ++   A A      L+T +
Sbjct: 309 AMAREGVFPAWFAKTSANGTPVRAHLVSSVLVTI--LVLMNYAKSMADAFTFMALLSTTS 366

Query: 360 VLLTMLPYFYSSINLIRFEGM--TTRNTFVMLFSGIASLFCMVALAGA 405
              T+  Y + S+ ++R +G     R+  + L + + +L+ +   +GA
Sbjct: 367 ---TLFAYLFCSLAVLRLQGQGRMDRSKALTLVAALGALYSVWTFSGA 411