Pairwise Alignments

Query, 519 a.a., transcriptional regulator CadC from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

 Score =  161 bits (408), Expect = 5e-44
 Identities = 134/508 (26%), Positives = 243/508 (47%), Gaps = 30/508 (5%)

Query: 7   QINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWDGAIVTDQ 66
           ++ +W++    N++ R  R+++ EPRLI+LL F A+H+GEV  R+ELI +VW  +IVT+ 
Sbjct: 7   RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66

Query: 67  VVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEESTASDVCL 126
           VVTQSI ELRK L+D  E++  Y+ TVPKRGYKL+         P +   EE    +  +
Sbjct: 67  VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV--------PVIWYSEEE--GEEIM 116

Query: 127 ADDIDDVEDAVPEIVFPAGPL---TRAVCQSQQPKKSSK-PNVSRWRLNLLN-AIWIGLV 181
                 + +AVP    P+  L     A    Q P KS +      W   LL+  I + LV
Sbjct: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV 176

Query: 182 IVAMGFFTVQQSQVRI---TQVVDTHLIEFKFQDGFHAQALTHELADGIAQKLMADLTQV 238
             +     +  S+ RI    + +D +++            L++  A G+   +   L   
Sbjct: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTF 234

Query: 239 SDYRVILGKTAYS--SGILPGKSIMVRVNDQDGHE----FLDLELKNNSSDAVLFSRQYP 292
           S + ++  K  Y+       GK++ +   +Q  +     F+ ++L +N+  + +  ++Y 
Sbjct: 235 STF-MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYV 293

Query: 293 LDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPAALGLYVRANHYLNVADRP 352
           + + +  ++       + +AL  P  ++  + L    P + A L  + +A+ YL   D  
Sbjct: 294 ITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDK 353

Query: 353 QFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQALNQDRMLVLSEQLQQVSYS 412
              +   LL ++++  P+  Y +AE  +   V+ +  P   L++ ++  L+ ++  +   
Sbjct: 354 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP---LDEKQLAALNTEIDNIVTL 410

Query: 413 PQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRESVLSYVLQGKHAELKGDLDGAS 472
           P+      IY+  A+ A V+ + + +   +     L  S L+YVL GK  E+KG    A+
Sbjct: 411 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 470

Query: 473 DAYSEAFYMDTSLETYLLCENLVFHSNL 500
           DAY  AF +     T    EN +F +++
Sbjct: 471 DAYLTAFNLRPGANTLYWIENGIFQTSV 498