Pairwise Alignments

Query, 90 a.a., DNA-binding protein HU-alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 90 a.a., transcriptional regulator HU subunit alpha from Pseudomonas simiae WCS417

 Score =  105 bits (261), Expect = 1e-28
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60
          MNK++LID IA  AD+ K  A  AL+A + +V GALK GD V L+GFGTF V  R ARTG
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARTG 60

Query: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89
          RNP+TG+ ++IAAA  P F AGKALK+A+
Sbjct: 61 RNPQTGKALQIAAAKKPGFKAGKALKEAV 89



 Score = 19.6 bits (39), Expect = 0.008
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 72 AAANVPAFVAGKALKDAIK 90
          A+A++P   AG+AL   I+
Sbjct: 12 ASADIPKAAAGRALDAVIE 30