Pairwise Alignments

Query, 90 a.a., DNA-binding protein HU-alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 90 a.a., DNA binding regulator, beta subunit B from Pseudomonas putida KT2440

 Score =  107 bits (267), Expect = 3e-29
 Identities = 54/89 (60%), Positives = 65/89 (73%)

Query: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60
          MNK++LID IA  AD+ K  A  AL+A + +V GALK GD V L+GFGTF V  R+ RTG
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60

Query: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89
          RNP+TG+ IKI AA VP F AGK LKDA+
Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAV 89



 Score = 21.2 bits (43), Expect = 0.003
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 72 AAANVPAFVAGKALKDAIK 90
          A+A++P  VAG+AL   I+
Sbjct: 12 ASADIPKAVAGRALDAVIE 30