Pairwise Alignments

Query, 326 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 58/280 (20%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 26  EQKEFYMLIGLDIGGTKIEICVLDKQGSMLYRQRIATPDNYSQ-----FVDCVCSLIVDA 80
           E + F+  IG+ +G     + + D    ++  +    P+   +      ++ +   I   
Sbjct: 82  ETRNFHA-IGVRLGRHDTTLTLYDLSSKVVAEEHYPLPERTQETLEHALLNTIAVFIDSC 140

Query: 81  EQATQPVDSIGIGLPGAVSPVTGLIKNANCTFLNGQDLSSDLQYRLGREVKLANDANCFA 140
           ++  + + +I + LPG V P +G+I+      +    L   L+ R      + +D    A
Sbjct: 141 QRKIRELIAISVILPGLVDPESGVIRYMPHIQVENWGLVEALEKRFHVTCFVGHDIRSLA 200

Query: 141 LSEAIDGAGK--ESMVVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLPGYHLEQD 198
           L+E   GA +  E  ++     GTG G  I+ N ++ +G N   GE G       H++ +
Sbjct: 201 LAEHYFGASQDCEDSILVRVHRGTGAG--IISNGRIFIGRNGNVGEIG-------HIQVE 251

Query: 199 GAARYCYCGRQNCIERFISGSGFQ--------DSYQALT--GECITASEIMKRYKQQEPE 248
                C+CG   C+E   + +  +          YQ+     +C T   I K   + +  
Sbjct: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC-TIKTICKAANRGDSL 310

Query: 249 AIHCYTQLIDHMARSFAGLVNVLDPDIIVLGGGLSNIDEL 288
           A      +  H+ ++ A  +N+ +P  IV+ G +   D++
Sbjct: 311 ASEVIEHVGRHLGKTIAIAINLFNPQKIVIAGEIIEADKV 350