Pairwise Alignments

Query, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  521 bits (1341), Expect = e-152
 Identities = 301/644 (46%), Positives = 411/644 (63%), Gaps = 33/644 (5%)

Query: 8   LLSAQRHHKRMITLLYDVFALMFSLYAAIALRL--DTLAFTFSFPEFLSMMTTVGVTLYC 65
           L+   R  KR + +  D+  +  +L+ A  +RL  D L   F    +L +   V + +  
Sbjct: 8   LVGLPRRQKRFLQVATDIVLVWAALWLAFVVRLGFDDLNNPFVVHLWLFLSAPV-IAIPL 66

Query: 66  FVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSGFFF---QAFIPRSVPFIYAGLAT 122
           F+  GMYRAV+RY    A+  I  +V +SA+ LAL  + +   Q  +PRS+ F Y  L+ 
Sbjct: 67  FIHFGMYRAVMRYFGNDALIAIIKAVSLSALLLALVVYLYSNHQTVVPRSIVFNYWWLSM 126

Query: 123 LTLGGPRIFIRTIY---YHYYKRQKP---------NVFIYGAGSTGRDLAYALIQGDEYH 170
           + +GG R+ +R  +   +    +  P          V IYGAG+ G  L  AL  G    
Sbjct: 127 VIIGGLRLAMRQYFQGDWFTAAQHVPFTSRDDGLIKVAIYGAGAAGNQLVAALRMGRVMR 186

Query: 171 PVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGKNTRIKLLERLSH 230
           PV F+DDD   + +II GL+V+     + + +     ++L+AI +  +  R ++L  L  
Sbjct: 187 PVAFIDDDSGISDRIISGLQVYKPKRIQQMIDETGAEELLLAIPSSTRARRREILGYLEG 246

Query: 231 WPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAG 290
           +P+ ++SVP   D+A+GR K  D+Q++DIADLLGR PV     LL++ I  + VMV+GAG
Sbjct: 247 YPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDPVPAQPELLERCIKHRVVMVSGAG 306

Query: 291 GSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQREN 350
           GSIGSELCRQIL  +P +L+LF+ +EYNLY I  EL+   Q+  LN  ++  LGSV+ ++
Sbjct: 307 GSIGSELCRQILTLEPTSLLLFDHSEYNLYCILSELEQRVQSESLNVTLLPILGSVRHQD 366

Query: 351 RVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLIS 410
           ++ ++M    V+TVYHAAAYKHVP+VE N+ EGI NNV GTL  A AA++AGV+NF LIS
Sbjct: 367 KLLEVMNTWSVDTVYHAAAYKHVPMVEHNIAEGILNNVIGTLNTAQAALQAGVENFVLIS 426

Query: 411 TDKAVRPTNIMGASKRMAELVLQALADKNSTTI--------------FTMVRFGNVLGSS 456
           TDKAVRPTN+MG++KR+AELVLQAL+ + + T+              FTMVRFGNVLGSS
Sbjct: 427 TDKAVRPTNVMGSTKRLAELVLQALSKEVAPTLFGDASNISRVNKTRFTMVRFGNVLGSS 486

Query: 457 GSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVK 516
           GSV+PLF KQI+AGGP+TVTHP I RYFM IPEAAQLVIQAG+M   G VFVLDMGEPVK
Sbjct: 487 GSVIPLFHKQIQAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVK 546

Query: 517 IVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENVEGTSHQKIMT 576
           IV+LA++MIHL G+    D  +  GDI I F+GLRPGEKLYEELLIG+NV  T H  IM 
Sbjct: 547 IVELAEKMIHLSGLSIRSD-TNPHGDILINFSGLRPGEKLYEELLIGDNVAATRHPMIMR 605

Query: 577 ACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQ 620
           A EE L W+ ++  L  L       D   ++++L +  +GYSP+
Sbjct: 606 ANEELLGWEVLKARLHGLLTAVEAGDFALVRQLLKNTVSGYSPE 649