Pairwise Alignments

Query, 471 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., AMP-dependent synthetase/ligase in alkane synthesis cluster from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  114 bits (286), Expect = 6e-30
 Identities = 121/483 (25%), Positives = 202/483 (41%), Gaps = 39/483 (8%)

Query: 14  RPDCIAVYENDRTISYENLASDIKKTAAKLVSLGVTSEDAVLVRSNNSYSFILLYFSIHY 73
           R +   V+ N R I++   A    + AA L   GV   D + + + N   ++ L+ +   
Sbjct: 20  RSNTALVFGNQR-ITHAQYAGRTARLAAGLADAGVGQGDRLAILAPNCLEYVDLFGAAAQ 78

Query: 74  VGAKFVNVAPDSDVSYVSFIEDKVNPKLFI--EKSQDFI--RNIDS---YTFDNIFPP-- 124
           +GA  V +        V+++ + V P++ I  ++ Q  +  R +D    YT      P  
Sbjct: 79  LGAIVVPINWRLSAEEVAYVIEDVAPRVLIVADEFQALLPQRGLDDTLRYTLGAAPAPWQ 138

Query: 125 --------------QARGIAD-----IMFTSGTTGEPKGVLLSHKSLVLATEHIISHVKN 165
                            G+AD     I+ T+   G P+G LLSH+ L+ A+         
Sbjct: 139 PVSELYRECDTQAADLPGLADDSGLLIIHTAAVGGRPRGALLSHRGLIAASLQTQLAWHL 198

Query: 166 TNEDVELLLMPLSHSFAMARMRTSLFAGGAIVVGCSFKQLKSVFKAIEFYKVTGLGLVPS 225
           T  DV L ++PL H  A+  M  +  AGGA ++   F    S+ K I+    + +G  P 
Sbjct: 199 TPTDVNLGVLPLFHVAAIGFMLATQQAGGATLLLTRFDP-PSLVKHIDEDGGSLIGTFPP 257

Query: 226 AWSYITLMTKDLIRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVMHYGLTEVSRAT 285
               +     D        L  +   S     E   ++    P       YG TE S + 
Sbjct: 258 MLGALL----DAAAAQGSSLARLRVVSGIDVPETIARLRTTCPQATFWSAYGQTETSGSV 313

Query: 286 FIDFHNDDINAVGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWMLDGYFENSQLTSDC 345
            +   ++   + G         ++D     +  G  GEIV + P +  GY+      +  
Sbjct: 314 SLAPFDERPGSAGRPTALNMVAVVDELDRPLPTGATGEIVVRGPMVFQGYWRCEADNAFT 373

Query: 346 FVEGYFKTGDLGRVVGD-YLFLTGR--LKEIINVGGKKVSPDQVEKVLSEALGVQECACA 402
              G+  TGD+GRV  + YL+ +GR   KE+I  GG+ V P +VE+V+ E   + +    
Sbjct: 374 LRNGWHHTGDMGRVDAEGYLWYSGRSPAKELIKPGGENVYPAEVERVIMEHPALAQVVVL 433

Query: 403 ALSDANMGEVVQAYIVVKSGWDCENVISNIKETINGQLPMHMRPKKYSIVSALPKTVSGK 462
            + D   GE V+A  V+K+G  C      + E + G++  + +PK    VSALP   +  
Sbjct: 434 GVPDVQWGEAVKAVCVLKAG--CTLSAEELIEFVGGRIARYKKPKHVVFVSALPLGGADS 491

Query: 463 VQR 465
           + R
Sbjct: 492 IDR 494