Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 256 a.a., O-antigen export system permease protein RfbD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  116 bits (291), Expect = 4e-31
 Identities = 63/241 (26%), Positives = 128/241 (53%), Gaps = 2/241 (0%)

Query: 25  LGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHIIYLFY 84
           LG + +  RY RS  G  W++I+M V I  +G ++  ++  G ++++ ++ +G I + F 
Sbjct: 17  LGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFL 76

Query: 85  TQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPTI-FLLVIWSSSANF 143
           + TINES GIF   A +      P  L +    YR  +I+LHN   I F++   ++S N 
Sbjct: 77  SATINESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNL 136

Query: 144 EFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPE 203
           +   +F+ ++ ++   ++      A+  TR+RD+  ++  ++ L FF++P++W    LP+
Sbjct: 137 DI-LLFIPAIVITSISLISTGMILAIFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPK 195

Query: 204 QYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVAWTFIIGMVSYFSYKVLDKKVIFW 263
             + +V  N F   +E++R P++G   +   +   +  + I+ MVS         ++++W
Sbjct: 196 GRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMVSTLVLTKYRSRIVYW 255

Query: 264 V 264
           +
Sbjct: 256 L 256