Pairwise Alignments

Query, 247 a.a., capsular biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., LPS biosynthesis protein from Magnetospirillum magneticum AMB-1

 Score = 79.3 bits (194), Expect = 7e-20
 Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 23/252 (9%)

Query: 1   MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTA 60
           +IVIPMAG  SRF +AGY +PK  ++  G+ +  H +++ A   AST  L I R  +  A
Sbjct: 6   IIVIPMAGEGSRFAQAGYAKPKPFIDVLGRPMIHHVIDNVAYAGAST--LLIARAAHCAA 63

Query: 61  VFVREKATQLGIKQFYIAELHT---ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTF 117
               E      +K     ++H     T G A T+    +++     D    I V N D F
Sbjct: 64  ----EPGVVAELKAAGNLDIHLLDGLTEGTACTLLAAYDKM-----DPDAPILVANSDQF 114

Query: 118 RPNFVF----PDISQHSDGYLEVFQG-GGDNWSFAKPEHAGSTKVIQTAEKNPISDLCST 172
               V       +++  DG + VF+      WS+AK    G   V + AEK+PIS+  + 
Sbjct: 115 VDGGVTAMLDDALARDLDGSIMVFKSEPHPKWSYAKLRDDG--LVERVAEKDPISEWATV 172

Query: 173 GLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNLLIQKGLNIHYHLIARHEVIFC 232
           G+Y+F     +  A    +A  + +    E Y  P+YN  I+ G  I    I +  +   
Sbjct: 173 GIYYFKSARAFRRAAEAMIA--ANDRVNNEFYTCPVYNYAIKAGARIGVWEIPQTAMHGL 230

Query: 233 GVPDEYTDFLRQ 244
           G P++   F+ +
Sbjct: 231 GTPEDLDAFIAE 242