Pairwise Alignments

Query, 269 a.a., formamidopyrimidine-DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., formamidopyrimidine-DNA glycosylase from Agrobacterium fabrum C58

 Score =  179 bits (453), Expect = 8e-50
 Identities = 115/297 (38%), Positives = 159/297 (53%), Gaps = 29/297 (9%)

Query: 1   MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQL-EGQTILAIHRRAKYL 59
           MPELPEVE  R G++P + G  ++ L L  P LR+P P +   L EG+TI+++ RRAKYL
Sbjct: 1   MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPADFAGLIEGKTIISLGRRAKYL 60

Query: 60  IIETAVGSAIV-HLGMSGSLRIL-----DGDFPAA---------KHDHVDLVMTSGKR-- 102
           +IE   G  IV HLGMSGS RI       G+ P A         KHDHV   +  G+   
Sbjct: 61  LIELEDGLTIVSHLGMSGSFRIEAEKGEGGEAPGAFHYARSKDGKHDHVVFHLDKGEERV 120

Query: 103 -LRYNDPRRFGAWLWCAPD--ESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIM 159
            + YNDPRRFG       +  + +     LGPEP   A +A+Y+  +   K   +K+ ++
Sbjct: 121 CVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTGNALSADYLASRFEGKSQPLKSTLL 180

Query: 160 DNAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQ------TLVANIKQVLQVAIKQG 213
           D   + G+GNIY  E+L+ + L PLR A +L     +       L   I+ V+  AI  G
Sbjct: 181 DQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRGKPKAQLIDLTEKIRDVIADAIAAG 240

Query: 214 GTTLKDFTQSDGKPGYFAQELQVYGKAKQPC--PHCGEPLCEQKIAQRNTFFCPQCQ 268
           G++L+D  Q+DG  GYF     VY +  QPC  P CG  +     A R+TF+C  CQ
Sbjct: 241 GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQ 297