Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  325 bits (833), Expect = 3e-93
 Identities = 198/557 (35%), Positives = 306/557 (54%), Gaps = 6/557 (1%)

Query: 9   SLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYLMM 68
           SL  R +L +L+++PL+ I   +M   +       Q+++ N R  +++ K+ EL++YL +
Sbjct: 2   SLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQI 61

Query: 69  GVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLY 128
             TA+ PL ++ +A  + A A  IL+ ++F   GY F YDS+G   L        G N  
Sbjct: 62  ADTALAPL-KARQAPLDDAIA--ILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118

Query: 129 GMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYI 188
            M+D  G  +I  L+  +K      Y+ + KP      PKL Y+ YLP+WD  +GTG Y 
Sbjct: 119 NMQDTQGNYLIQDLLKNAKLNQFTTYY-FPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYT 177

Query: 189 DDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA-PLQHVVSSLQ 247
           DDVD ++AE  A+ E  L   + +  G++++ +V  +  ++++++R I  PL+   +S+ 
Sbjct: 178 DDVDAEIAEMEARAEEQLEQGLYTLAGITLL-IVILVSVMAIMINRSIMRPLELFDNSIS 236

Query: 248 AVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQT 307
           + A+G  DLTAR++  S  E   ++  FN F++ L  ++  +      V      + Q+ 
Sbjct: 237 SFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRA 296

Query: 308 SQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAI 367
           +Q  H       ET++V  A+TEM+ TA+E+++N  + AQ+ + A          VN A 
Sbjct: 297 TQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAA 356

Query: 368 DGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGR 427
             +  L  EV   S+ +  L      IT  L VI DIAEQTNLLALNAAIEAARAGEQGR
Sbjct: 357 RSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGR 416

Query: 428 GFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKE 487
           GFAVVADEVR LASRTQ ST++I  M+  L  G   AV++M  SQ+R   T  E+    E
Sbjct: 417 GFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAE 476

Query: 488 SLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSAS 547
           +L  I  ++  I DM    A+A E+QS V ++I+Q +V I    +E ++   Q    S +
Sbjct: 477 ALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQT 536

Query: 548 LSHSGQQMGTLVGHFKL 564
           L+    ++  LV  FK+
Sbjct: 537 LNGRAHELYELVARFKV 553