Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  221 bits (564), Expect = 4e-62
 Identities = 174/564 (30%), Positives = 282/564 (50%), Gaps = 34/564 (6%)

Query: 10  LRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQ--KELENYRTDLIDAKKKELQAYLM 67
           ++ +T+  LL+ I L  + AL       +GL TL+    L+N       A+  EL     
Sbjct: 1   MKLKTQAYLLSAIILAALLALTA-----TGLWTLRVASNLDN------KARVTELFNSAY 49

Query: 68  MGVTAVKPLYESDKAGENQAQA--KQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGK 125
             +T V+ L +  K  E +A+A   ++++   +  + Y +  D         + P+L   
Sbjct: 50  SILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDT 109

Query: 126 NLYGMKDENGVAVIAGLIDASKTGDGFLY-FSW-HKPTINAQAPKLGYAEYLPKWDWVLG 183
           + +  KD  G +V   + D  +   G L  ++W  K    +   KL  A   P W WV+G
Sbjct: 110 SFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVG 169

Query: 184 TGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVV 243
           TGI  ++V+   A F +  +  L   +   I ++++ L+   I   +L+  G      V 
Sbjct: 170 TGIGFNEVN---ARFWSTAQWQL--SLCVVIAVAILSLLLVAIRKILLIIGGEP--NEVR 222

Query: 244 SSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMD---KLHPLMTDIRASANTVEAAA 300
           S++QAVA G       IK   +   G V +  ++  D   KL   M  +R+        A
Sbjct: 223 SAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRA 282

Query: 301 QELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQ 360
           + + + T       D     T  +  A+TEM+++A +VA +   TA   + A+ Q    Q
Sbjct: 283 KSIAELT-------DSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQ 335

Query: 361 KEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAA 420
           K ++  +  I  L  ++   S AV DL      I +VL VIGDIAEQTNLLALNAAIEAA
Sbjct: 336 KLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAA 395

Query: 421 RAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTAL 480
           RAGEQGRGFAVVADEVR+LA RTQ STKEI +M++ L +G   A+Q++ I  +  + +  
Sbjct: 396 RAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQ 455

Query: 481 ESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQ 540
           ES     +LA I  A+  +  M  Q A+AA +Q+ V++DI + +  I++  ++LS    +
Sbjct: 456 ESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVME 515

Query: 541 TESVSASLSHSGQQMGTLVGHFKL 564
           + + + +L+   +++     HF++
Sbjct: 516 SHNSTQTLTKLARELEQWAAHFEV 539