Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  298 bits (762), Expect = 5e-85
 Identities = 184/568 (32%), Positives = 303/568 (53%), Gaps = 31/568 (5%)

Query: 4   NLMLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQ 63
           ++ L  L  R +L LLTV+ ++V+ A+  A+            +++YR DL+  K+ + Q
Sbjct: 13  SVSLRHLSIRNRLFLLTVV-ILVLLAIPFAIM-----------VKDYRHDLMLEKQVQTQ 60

Query: 64  AYLMMGVTAVKPLYESDKAGE---NQAQ--AKQILKAMRFDSDGYFFAYDSQGVNTLHAI 118
             +    T ++   +    G     QAQ  AKQ +  +R+ ++ YF+  D+Q    +H +
Sbjct: 61  HLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPM 120

Query: 119 KPELEGKNLYGMKDENGVAVIAGLIDASKTGD-GFLYFSWHKPTINAQAPKLGYAEYLPK 177
           KP+L GK+L   KD NG A+   +++ ++    G + + W KP       K+ Y +    
Sbjct: 121 KPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKP 180

Query: 178 WDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA 237
           W W++GTGIY+DDV+  V             Q +S+I + VVG +  +I ++ L+ R I 
Sbjct: 181 WGWIIGTGIYVDDVNALVM------------QRLSSILVWVVGTLLVLIVLASLIGRSIT 228

Query: 238 -PLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTV 296
            P +  +++L+ +A G GDLT ++ V  +DE+  +A+AFN F +K+  ++ +I     +V
Sbjct: 229 QPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESV 288

Query: 297 EAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQI 356
             +A EL Q    AS K        D V +A+ ++ A+ +EVA + +   QA  SAN   
Sbjct: 289 TGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAA 348

Query: 357 AVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAA 416
           +  ++ + L    +  L +++ +T      L+ +   ++ VL+VI  +AEQTNLLALNAA
Sbjct: 349 SQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAA 408

Query: 417 IEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGE 476
           IEAARAGEQGRGFAVVADEVR+LA+RTQ ST EI +++  L +      QSM  +Q++  
Sbjct: 409 IEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSR 468

Query: 477 KTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSE 536
            T  ++ Q ++ L  I   +  I       A A+ QQS   ++I +NL  I +   + S 
Sbjct: 469 VTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASA 528

Query: 537 SFKQTESVSASLSHSGQQMGTLVGHFKL 564
              Q  + S  L  +GQ +   +  FK+
Sbjct: 529 QANQVAAASEQLMENGQHLARSLAVFKI 556