Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

 Score =  250 bits (638), Expect = 1e-70
 Identities = 148/357 (41%), Positives = 218/357 (61%), Gaps = 1/357 (0%)

Query: 209 QMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVV-SSLQAVAAGGGDLTARIKVESQDE 267
           +++S +    V LV  ++A  +   R +    HV+  ++ +++AG  DLT RI ++ +DE
Sbjct: 308 EVLSTLAYIQVPLVILLLATMLFAIRQLMQRLHVLRGNIDSLSAGDADLTRRIALKGEDE 367

Query: 268 IGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAA 327
           +  V  + N F+  L  ++ D+  ++  +     +L QQ+   +  +  H  ETD+ V A
Sbjct: 368 MDAVGDSVNRFIAYLQNMIADVTQASALIAEELAQLQQQSRHTNEVLTRHANETDQAVTA 427

Query: 328 VTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDL 387
           +TEMS+TA  VA +   TA    +AN     +++ V  A   +  LV EV   +A V  +
Sbjct: 428 ITEMSSTADTVAQSATETAAFTRNANDNAEQSKQVVAEASASVLALVGEVESATARVLAM 487

Query: 388 SQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNST 447
            Q A +I  VL VIG+IA QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST
Sbjct: 488 QQDAQRINDVLGVIGEIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAGRTQQST 547

Query: 448 KEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTA 507
            EI EML  L QGVS AVQ+M  ++   + TA  + ++   L  ++ AVS IHD+  Q A
Sbjct: 548 SEINEMLAKLQQGVSSAVQAMEQTKASCQATADRTSRVNVGLDDMASAVSRIHDLSAQIA 607

Query: 508 SAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL 564
           +AAE+QSAV E+INQN+VAI+ +V++L    +Q +  + +L  S +++  LV  FK+
Sbjct: 608 TAAEEQSAVTEEINQNMVAIRHMVDDLVAGGQQADRSTDALLASNRRLVELVNRFKV 664