Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Polyribonucleotide nucleotidyltransferase from Xanthobacter sp. DMC5

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 24/244 (9%)

Query: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRW----LKGQGK 56
           +R D R    VRPI         A GS L   G T+ L  A++  G        L+G  K
Sbjct: 317 IRIDGRDVRTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376

Query: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116
                 Y   P +     R     G  G R +   +L  R++R ++  +      + V  
Sbjct: 377 EHFLLHYNFPPFSVGETGRM----GSPGRREIGHGKLAWRAIRPMLPAKHEFPYTLRVVS 432

Query: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172
           ++++++G +  A++ G S+AL DA             P++  VA +++G++ ED    VL
Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGV-----------PLRRPVAGIAMGLILEDEKFAVL 481

Query: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232
            D+   ED   D D  V  TE+G +  +Q   +    + E +   L  AK G   I+   
Sbjct: 482 SDILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEM 540

Query: 233 KASL 236
             +L
Sbjct: 541 SKAL 544



 Score = 33.9 bits (76), Expect = 9e-06
 Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 25/180 (13%)

Query: 24  AEGSVLVEFGNTKVLCN-ASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGK 82
           A+GSVL  +G+TKVL    S +E  P    GQ    +T  Y      T++  R      K
Sbjct: 27  ADGSVLATYGDTKVLATVVSAKEPKP----GQDFFPLTVNY---QEKTYAAGRIPGGYFK 79

Query: 83  QGGRTME----IQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALA 138
           + GR  E    + RLI R +R +       +  + V       +      ++  AS AL 
Sbjct: 80  REGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVVTVLAHDLENDPDVVALVAASAALT 139

Query: 139 DAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMI 198
                      L   P  G V A  VG +  + +  L    D   ++ +++V+   G  +
Sbjct: 140 -----------LSGIPFMGPVGAARVGFIDNEYV--LNPTVDEVKESSLDLVVAGTGDAV 186