Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 701 a.a., polynucleotide phosphorylase/polyadenylase from Pseudomonas simiae WCS417

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 62/219 (28%), Positives = 92/219 (42%), Gaps = 32/219 (14%)

Query: 2   RPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR------WLKGQG 55
           R D R    VRP+ I         GS L   G T+ L  A++  G  R       L+G+ 
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATL--GTARDAQLLDTLEGEK 373

Query: 56  KGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
           K      Y   P +     R     G  G R +   RL  RS+ A++    +    I V 
Sbjct: 374 KDPFMLHYNFPPFSVGECGRM----GGAGRREIGHGRLARRSIAAMLPAADVFPYTIRVV 429

Query: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----V 171
            ++ +++G +  AS+ GAS+AL DA             PMK  VA +++G++ E     +
Sbjct: 430 SEITESNGSSSMASVCGASLALMDAGV-----------PMKAPVAGIAMGLVKEGEKFAI 478

Query: 172 LCDLEYVEDSAADTDMNVVMTEEGKM-----IEIQGTAE 205
           L D+   ED   D D  V  T +G       I+I+G  E
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITE 517