Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 711 a.a., polynucleotide phosphorylase/polyadenylase (RefSeq) from Escherichia coli BW25113

 Score = 48.1 bits (113), Expect = 5e-10
 Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 36/249 (14%)

Query: 2   RPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGKG 57
           R D R  D +R + +         GS L   G T+ L  A++    +  V   L G+   
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 58  WVTAEYGMLPRATH------SRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIM 111
                Y   P +        S  RRE  +G          RL  R + AV+         
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----------RLAKRGVLAVMPDMDKFPYT 424

Query: 112 ITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED- 170
           + V  ++ +++G +  AS+ GAS+AL DA             P+K  VA +++G++ E  
Sbjct: 425 VRVVSEITESNGSSSMASVCGASLALMDAGV-----------PIKAAVAGIAMGLVKEGD 473

Query: 171 ---VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIAD 227
              VL D+   ED   D D  V  + +G +  +Q   + E  + E +   L  AK     
Sbjct: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLH 532

Query: 228 IVAVQKASL 236
           I+ V + ++
Sbjct: 533 ILGVMEQAI 541