Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., Polyribonucleotide nucleotidyltransferase from Azospirillum sp. SherDot2

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 2   RPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL----CNASIEEGVPRWLKGQGKG 57
           R D R    VRPI         A GS L   G T+ L       S +E +   L+G+ + 
Sbjct: 313 RIDGRDTKTVRPIVSEVGILPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYRE 372

Query: 58  WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
                Y   P +     R     G  G R +   +L  R++  ++  +      + V  +
Sbjct: 373 HFMLHYNFPPYSVGEAGRM----GSPGRREIGHGKLAWRAIHPLLPKKEDFPYTLRVVSE 428

Query: 118 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VLC 173
           V +++G +  A++ G S++L DA A LI             VA +++G++ ED    VL 
Sbjct: 429 VTESNGSSSMATVCGTSLSLMDAGAPLIRP-----------VAGIAMGLIKEDHGFAVLS 477

Query: 174 DLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233
           D+   ED   D D  V  TE G +  +Q   +    + E +   L  AK G   I+    
Sbjct: 478 DILGDEDHLGDMDFKVAGTEVG-VTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMS 536

Query: 234 ASL 236
            +L
Sbjct: 537 KAL 539



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 42/203 (20%)

Query: 24  AEGSVLVEFGNTKVLCNASIEEG-------VPRWLKGQGKGWVTAEYGMLPRATHSRTRR 76
           A G+VLV +G+T VLC A   +         P  +  Q K +     G +P     R   
Sbjct: 27  ANGAVLVTYGDTTVLCTAVAAKAPKPGIDFFPLTVNYQEKAFAA---GKIPGGFFKR--- 80

Query: 77  EATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQAD--GGTRTASITGAS 134
               G+   +   + RLI R +R +       E  +   C V+  D        ++ GAS
Sbjct: 81  ---EGRPTEKETLVSRLIDRPIRPLFADGFRNETQVV--CTVLSHDLENDPDIVAMVGAS 135

Query: 135 VALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEE 194
            AL            +   P  G +AA  VG      +  L    D   D+D+++V    
Sbjct: 136 AALT-----------ISGIPFLGPIAAARVGYKNGQYI--LNPTRDEVGDSDLDLV---- 178

Query: 195 GKMIEIQGTAEGEPFSHEQLLEL 217
                + GT EG      +  EL
Sbjct: 179 -----VAGTVEGVLMVESEAKEL 196