Pairwise Alignments

Query, 718 a.a., TonB-dependent siderophore receptor from Vibrio cholerae E7946 ATCC 55056

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  375 bits (964), Expect = e-108
 Identities = 239/690 (34%), Positives = 377/690 (54%), Gaps = 47/690 (6%)

Query: 70  SALKVETPAQETPKALSIVTQEEIVARAPQKLDEALRYTSGVTAQPYGAD-NDTDWLKVR 128
           S  K +T   ETP+++SIVT++++ A+  + L++ LRY++ V  +  GA  +  D L +R
Sbjct: 150 SGTKTDTALIETPQSISIVTKDQMRAQNAESLNQILRYSAAVIPETRGATASRLDQLTIR 209

Query: 129 GFDAATYQDGSRLFRDGYYTWLIEPYALERIEVLKGPASILYGEAPPGGVVNAVQKKPTD 188
           GF  ATY DG R+          + + LER+EVL+GPAS+LYG+  P GV+N V K+P D
Sbjct: 210 GFSPATYLDGLRMPSSRDALPQKDAFDLERVEVLRGPASVLYGQGTPSGVINMVSKRPLD 269

Query: 189 IPQGEVGLQVGNDALRTLTLDISDYANQDGSVRYRLVALMKENDGQLNGTQTSRNYLAPS 248
            P  EVG++ G    +  T D+S   +  G   YR+  L  + DGQ+  T+T R  L+ +
Sbjct: 270 TPFHEVGVEYGTFNKKRTTFDLSGPMDDQGVYSYRVAGLFDDADGQVEHTETRRQSLSSA 329

Query: 249 LSIDISEQTRLTLLASFLEDSGVPTNPFFPAAGTLIDSNFGH-IDPSTNLGQPDYDKYER 307
            +    + T LTLL  F +D    +    PA G+++ S  G  ID     G+ +++K +R
Sbjct: 330 FTWRPDDATSLTLLGHFQKDPKGASYGSVPAWGSVLHSPTGRSIDVDFYDGEKNFEKSDR 389

Query: 308 RQVSLGYLFEHDLNDVWALSQTFNYGDNDLYLRSSYAFSNDDPSKDTLTQGIVFRDGSTE 367
              S+G+ FEH  +DVW + Q   Y  ++   RS Y+ +       T+ +  +  D   +
Sbjct: 390 EYYSIGWAFEHHFDDVWTVRQNARYLRSEGQYRSLYS-NYLMADYRTIRRSTIASDVDLD 448

Query: 368 SLSLDNKAVAKWDSARVENTLLMGLELQRHQTQGVELDN-YSFG-TINPFNPNYGNFTPI 425
           + +LDN+  AK+D+  +++TLLMGL+ Q   T  +     Y+ G T++ FNP YG   P+
Sbjct: 449 AYTLDNQVQAKFDTGPLQHTLLMGLDYQNTSTDTLSGSGVYTAGPTLDIFNPVYGAAVPV 508

Query: 426 DESSAADRTITKEQASLYAQYQIKLDQQWIGLIGGRMDWVDTENESQ---KNMQRKSRSD 482
             +   D T   EQ  +Y Q Q+K D +W+ L+GGR DW  T+N +Q      + KS  D
Sbjct: 509 -PAYTTDGTSRSEQTGVYLQEQMKWD-KWVLLLGGRYDWASTDNSTQTLSSGAKSKSSLD 566

Query: 483 AE-FSFNAGLMYLASNGVSPYLSYSQSFDVLSTIDSAKGELYKPLKGEQTEVGVKYQPEF 541
           ++ F+   GL+YL  NG++PY SY++SF+  S      G ++KP +G+Q E+G+KYQP  
Sbjct: 567 SKAFTGRIGLVYLFDNGLAPYASYAESFNPQSGTGYG-GSVFKPTEGKQYEIGIKYQPPG 625

Query: 542 YDGYINLAWFDITQQNALVTNP-------TTFVATQTGEMTAQGIEVESVGYVTDSLKLT 594
            + +I  A FD+ Q N L T+P       T    +Q GE+ ++G E+E    + D+L +T
Sbjct: 626 SNSFITAAIFDLRQTNVLTTDPDPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDIT 685

Query: 595 ASYTFTD---AKTDET---------------GGKGTQQAGLIPKHQASAWLDYDAAQLGL 636
           A+Y + D   +K++ T                 +GT   G +P+H ASAW DY      L
Sbjct: 686 AAYAYLDNRISKSNNTVRYAPISDIGVGPAIAAEGTTTYG-VPRHTASAWADYTVHDGKL 744

Query: 637 QGWTFGSGVRYIGESKDNPRSSDRTVPSVTLVDLMAGYEI------TENWQVQLNINNLF 690
           +G+  G+G RY+G S  +  ++ + VP  TL D    Y+I       +N ++ LN  NL 
Sbjct: 745 KGFGVGAGARYVGSSWGDTANTLK-VPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLA 803

Query: 691 DREFVSGC-DY-WCYYGQSRSAVLSANYRW 718
           ++E+V+ C  Y WC+YG  R+   SA Y+W
Sbjct: 804 NKEYVASCYSYSWCWYGSQRTVQASATYQW 833