Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., ABC transporter, transmembrane region:ABC transporter from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  605 bits (1561), Expect = e-177
 Identities = 305/609 (50%), Positives = 420/609 (68%), Gaps = 4/609 (0%)

Query: 3   MFQWFEKLTEPFPAQEPQTPPKSLVAFCRYYTQGFEKPLLLMSLLSACVAMAEVTLVRYM 62
           +++ FEKL + F       PP ++ AF  YY +        + ++    A+ EV+L  Y+
Sbjct: 2   LYRRFEKLIDIFKDAPTAAPPNTVFAFYLYYLRQVWPTFTALLVVGLIGALIEVSLFSYL 61

Query: 63  GEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALVHSMLLHQTILGNYPMSIRWS 122
             I+D+  T     F+ +HG  L  M  + L++ PI   +H +L+HQTI       IRW 
Sbjct: 62  SRIIDLAQTTPPENFFSIHGSELIWMVVVALLLRPIFVGLHDLLVHQTISPGMTNLIRWQ 121

Query: 123 THRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLVDLSVYIAVYMVSMLVMIAEA 182
            H ++LKQS+ FFQ DFAGR+A ++MQ  NS+R++ ++ VD   ++ +Y +S +V+ AEA
Sbjct: 122 NHSHVLKQSVNFFQNDFAGRIAQRIMQTGNSLRDSAVQTVDALWHVLIYAISAMVLFAEA 181

Query: 183 DKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANAQSQMTGRIVDTYTNITTVKLFSHS 242
           D  L++P+  W+  +I   +YFVPR+K  S D ++A+S++ GRIVD YTNITT+KLF+H+
Sbjct: 182 DWRLMIPLGTWIAAFILSLMYFVPRVKQRSVDSSDARSRLMGRIVDGYTNITTLKLFAHT 241

Query: 243 QRETTYAKSGMKQFLHTVYRQM--RTLTSLLYSVDLINYLLLFSIAALSIQLWLAETVTV 300
             E  YA+  M+   HT   Q+  R +TS+  ++  +N +L+ +   L++ LW    ++V
Sbjct: 242 NHEQQYAREAMRD--HTEKSQLAGRVVTSMDTTITTMNGILIVTTTGLALWLWTQSIISV 299

Query: 301 GVIAIGITIALRMQGMSKWIMWEIRALFESVGTVIDSMNTIANPVEIEDRPQAKSLQVKF 360
           G IA+   + +R+  MS WIMW +  +FE++GTV D + +I+ PV + D+P A  L+++ 
Sbjct: 300 GAIALATGLVIRIVNMSGWIMWVVNGIFENIGTVQDGLESISQPVTVNDKPGALPLKIEN 359

Query: 361 GELSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRFYDVQSGQI 420
           G + F  V F Y     +  +LNL I+ GEK+G++G SGAGKSTLVNLLLR YDVQ G+I
Sbjct: 360 GGVRFDGVDFHYGNGNGIIHNLNLDIKPGEKIGLIGPSGAGKSTLVNLLLRMYDVQGGRI 419

Query: 421 RIDGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYGNPDADQAAIEEAARQAHAHD 480
            IDGQDIS ++QESLR  IGMITQDTSLLHRSIR+N+LYGNP A    + E+  +A A +
Sbjct: 420 LIDGQDISEITQESLRAQIGMITQDTSLLHRSIRENLLYGNPHATDEQLWESIHKARADE 479

Query: 481 FIQELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEATSALDSEVE 540
           FI  L D +GRTG+D  VGERGVKLSGGQRQRIAI RVLLK+APILIMDEATSALDSEVE
Sbjct: 480 FIPLLSDSEGRTGFDAHVGERGVKLSGGQRQRIAITRVLLKDAPILIMDEATSALDSEVE 539

Query: 541 SAIQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAHKGIYAQLW 600
           +AIQE+L TLM GKTVIAIAHRLSTIA MDRL+V+++G+I E GTH ELLAH G+YA+LW
Sbjct: 540 AAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLEKGQIAETGTHSELLAHGGLYARLW 599

Query: 601 AHQTGGFIG 609
            HQTGGF+G
Sbjct: 600 QHQTGGFVG 608