Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  267 bits (682), Expect = 1e-75
 Identities = 186/491 (37%), Positives = 262/491 (53%), Gaps = 18/491 (3%)

Query: 119 IRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLVDLSVYIAVYMVSML-V 177
           +R +T  +LL+ S+ +F     G +  ++    + +    L L  L     V M+ M  V
Sbjct: 189 LRTTTFDHLLELSLDYFSSKRTGDLMARIGSETDRI-SVFLSLHALDFLTDVLMIGMTAV 247

Query: 178 MIAEADKILVVPILVWLLFYIAIQVYFV-PRLKTISTDQANAQSQMTGRIVDTYTNITTV 236
           ++   +  L +  LV L F I   ++ V  RL+T          ++T  + DT   I  V
Sbjct: 248 ILFSINPWLALATLVPLPF-IGWMIHLVRDRLRTGFEKIDRVWGEVTNVLADTIPGIRVV 306

Query: 237 KLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLINYLLLFSIAALSIQLWLAE 296
           K F+   RE    +   +  L    R  +T +    +V L+  + L  + A  I L    
Sbjct: 307 KAFAQEAREARRFRRANEHNLAVNDRINKTWSLFTPTVTLLTEIGLLVVWAFGIWLVSQS 366

Query: 297 TVTVGVIAIGITIALRMQG----MSKWIMWEIRALFESVGTVIDSMNTIANPVEIEDRPQ 352
            +TVGV+   I    R  G    MS+ +    +A       + D ++ ++N   + +  Q
Sbjct: 367 EITVGVLTAFIAYIGRFYGRLDSMSRIVSVTQKAA-SGAKRIFDILDHVSN---VPEPTQ 422

Query: 353 AKSLQVKFGELSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRF 412
              L    G L    V F Y + +TV  +L+L I+ GE +G+VG SG+GKSTLVNLL RF
Sbjct: 423 PVPLTRVQGGLQMENVSFRYGS-RTVIRNLSLDIRPGEMIGLVGHSGSGKSTLVNLLCRF 481

Query: 413 YDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYGNPDADQAAIEEA 472
           YDV  G IRIDG DI  V     RRHIG++ Q+  L   +I +NI YG P A +  I  A
Sbjct: 482 YDVSEGGIRIDGTDIRRVGVADFRRHIGLVLQEPFLFFGTIAENIAYGRPGATRTEIVAA 541

Query: 473 ARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEAT 532
           AR AHAH+FI  L       GYD  VGERG  LSGG+RQRI+IAR LL +  ILI+DEAT
Sbjct: 542 ARAAHAHEFILRLPQ-----GYDSLVGERGQGLSGGERQRISIARALLIDPRILILDEAT 596

Query: 533 SALDSEVESAIQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAH 592
           S++D+E E  IQ+ L  L+ G+T IAIAHRLST+   DRL+VMD G++VE G H EL+A 
Sbjct: 597 SSVDTETEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVMDRGQVVEIGPHDELMAQ 656

Query: 593 KGIYAQLWAHQ 603
           +G Y +L+  Q
Sbjct: 657 RGAYWRLYEAQ 667