Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Erwinia tracheiphila SCR3

 Score =  246 bits (627), Expect = 3e-69
 Identities = 170/534 (31%), Positives = 281/534 (52%), Gaps = 30/534 (5%)

Query: 85  LWTMAALV--LVVMPILALVHSMLLHQTILGNYPMSIRWSTHRYLLKQSIGFFQRDFAGR 142
           LW   A++  ++V  + + + S  +   + GN  MS+R     +++   + FF +   G 
Sbjct: 65  LWMPLAVIGLMLVRGVTSYISSYFI-SWVSGNVVMSMRRRLFSHMMGMPVAFFDQQSTGT 123

Query: 143 VATKVMQNANSVRETVLKLVDLSVYIAVYMVSMLVMIAEADKILVVPILVWLLFYIAIQV 202
           + +++  ++  V  +    +   V     +V + VM+      L + IL+ L   ++  +
Sbjct: 124 LLSRITYDSEQVASSSSSALVTVVREGASIVGLFVMMFYYSWQLSI-ILIVLAPVVSFAI 182

Query: 203 YFVP-RLKTISTDQANAQSQMTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVY 261
            +V  R + IS +  N   Q+T            V +F   + E+        +    V 
Sbjct: 183 RYVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEIES--------ERFDRVS 234

Query: 262 RQMRTLTSLLYSVDLINYLLLFSIAALSIQLWL--------AETVTVGVIAIGITIALRM 313
            +MR     L S   I+  ++  IA+L++   L         +T+T G I +  +  + +
Sbjct: 235 NRMRQQGMKLVSASSISDPIIQLIASLALAFILYAASFPSVMQTLTAGTITVVFSSMIAL 294

Query: 314 QGMSKWIMWEIRALFESVGTVIDSMNTIANPVEIEDRPQAKSLQVKFGELSFSQVRFGYS 373
               K +   + A F+       ++ +I +  +  D   +++++   G++ F QV F Y 
Sbjct: 295 MRPLKSLT-NVNAQFQRGMAACQTLFSILDSKQETDSG-SRTIERAKGDVEFRQVTFTYP 352

Query: 374 AQKT-VFDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQ 432
            +      ++NL I  G+ V +VGRSG+GKST+ +L+ RFYD+Q G+I IDG D+   + 
Sbjct: 353 GRDVPALQNINLSIPEGKTVALVGRSGSGKSTIASLMTRFYDIQQGEILIDGHDLREYTL 412

Query: 433 ESLRRHIGMITQDTSLLHRSIRDNILYGNPDA-DQAAIEEAARQAHAHDFIQELQDEQGR 491
            SLR  + +++Q+  L + ++ +NI Y   +   +  IE+AA  AHA DFI+++ +    
Sbjct: 413 RSLRNQVALVSQNVHLFNDTVANNIAYARAEHYSREDIEKAAIMAHAMDFIKKMDN---- 468

Query: 492 TGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEATSALDSEVESAIQENLHTLM 551
            G D  +GE GV LSGGQRQRIAIAR LL++ PILI+DEATSALD+E E AIQ  L  L 
Sbjct: 469 -GLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESEHAIQAALDELQ 527

Query: 552 AGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAHQTG 605
             +T + IAHRLSTI   D ++V+++G IVE+G+H+ LLAHKG YAQL   Q G
Sbjct: 528 KNRTSLVIAHRLSTIEKADEIVVVEDGHIVERGSHKVLLAHKGAYAQLHKMQFG 581