Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 637 a.a., ATP-dependent DNA helicase RecQ from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  518 bits (1334), Expect = e-151
 Identities = 283/614 (46%), Positives = 390/614 (63%), Gaps = 30/614 (4%)

Query: 19  VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLE----GVTLVI 74
           VLHEVFGY  FR  Q +++    AG D+LV+MPTGGGKSLCYQ+PA+V E    G+T+V+
Sbjct: 21  VLHEVFGYDAFRGPQADIVSHVGAGGDALVLMPTGGGKSLCYQVPAIVRERTGQGLTVVV 80

Query: 75  SPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEF 134
           SPLI+LM DQV  L   GVAA  +NS+L+ E+   +  +M  G+L LLY +PER+ T  F
Sbjct: 81  SPLIALMHDQVGALIEAGVAAAFLNSSLSLEDAQQVEKQMLRGELTLLYAAPERLTTPRF 140

Query: 135 IERLSHL----PLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDA 190
           +  L  L     L++ A+DEAHC+SQWGHDFRPEY +L  L +R+  VP +ALTATADD 
Sbjct: 141 LALLDSLHERGKLSLFAIDEAHCVSQWGHDFRPEYRALVVLHERYAGVPRVALTATADDL 200

Query: 191 TRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRG-----QCGIIY 245
           TR DI++RLQL E   ++ SFDRPNIRY LVEK    +Q+ R++  +         GI+Y
Sbjct: 201 TRADIVERLQLQEARTFISSFDRPNIRYQLVEKKDATTQLQRFIRDEHTGADGHDAGIVY 260

Query: 246 CGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINK 305
           C SR++VE +   LC     A  YHAG+DA  R   Q+ F R++  I+VAT+AFGMGI+K
Sbjct: 261 CQSRRRVEEVAAMLCEAGFNALPYHAGLDAAVRQRHQDRFLREEGLIMVATIAFGMGIDK 320

Query: 306 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ-K 364
           P+VRFV H D+P+NIE YYQETGRAGRDG PA A M Y   D+   RRM+DE P   + K
Sbjct: 321 PDVRFVAHLDMPKNIEGYYQETGRAGRDGEPANAWMAYGLQDVVNQRRMIDESPAADEFK 380

Query: 365 QVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALS 424
           QV   KL A+   AEA  CRR  LL+YFGE   +PCGNCD CL PP+  DATE ARK LS
Sbjct: 381 QVLRGKLDALLTLAEASDCRRVRLLSYFGE-ASQPCGNCDNCLTPPELHDATESARKLLS 439

Query: 425 CVYRVNQ----NFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI 480
           C+YRV Q     FG G+++++LRG    +++++GH+K++T+GIG D S   W ++ RQLI
Sbjct: 440 CIYRVQQASGTAFGAGHIMDILRGKATDKVKQYGHEKLSTFGIGADLSETQWRALLRQLI 499

Query: 481 HKGMLYQNITRNSTLQLTEEARPLLRGEMNIEL--AVPRLDTAARA---------AKSDK 529
            +  +  +    +TL L + AR +L+G+  + L     +  ++AR+         AK D 
Sbjct: 500 AREAVQVHDAPYNTLHLADAARDILKGQSPVWLKSLADKAASSARSGRQRASRATAKDDG 559

Query: 530 LSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQ 589
           +     +++    L+  R  +A +  LP +V+F DATL  +A   P +  ++  + G+GQ
Sbjct: 560 VPLSLSERECLEALKAWRAGVAREHNLPAFVIFHDATLRAIAGRKPETLADLDGIAGIGQ 619

Query: 590 RKLEKYADPFLDLI 603
           +K E Y    L ++
Sbjct: 620 KKREAYGSDVLQVV 633