Pairwise Alignments

Query, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Uncharacterized inner membrane protein RarD from Sphingobium sp. HT1-2

 Score =  231 bits (589), Expect = 2e-65
 Identities = 121/308 (39%), Positives = 187/308 (60%), Gaps = 19/308 (6%)

Query: 3   MTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGR 62
           +T  + +A+KG++ AI  Y++WG+ P++F+ L  V  +EI++ RV+WS +L+ VL+   +
Sbjct: 1   VTIAESEARKGVIAAIGTYSIWGMLPLFFRLLHHVDPIEIVTQRVIWSVILILVLLAARK 60

Query: 63  RWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGM 122
              + V  + TPR    L  +A+++  NWL+++W++N  H++  SLGY++NPL++V LG+
Sbjct: 61  GLAAFVAALRTPRLVLPLAASAVMIAINWLVYVWAVNDGHVVACSLGYFLNPLVSVGLGV 120

Query: 123 LFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQTG 182
           + L ERLR+ Q  A+A+AAIGV I      +   +++ALA SF  YGL+RK   V   TG
Sbjct: 121 VILKERLRRGQMLAIAIAAIGVAILAAAALTTLWISLALAISFALYGLIRKLTPVAPMTG 180

Query: 183 LFLETLFMLPAAAIYLIWLA---------DTPTSDMALNTWQLNLLLVCAGVVTTLPLLC 233
           L +ETL ++  A  YLIWLA         D PT+           LL+ AG VTT+PL+ 
Sbjct: 181 LGVETLLLVAPAIGYLIWLAGHGGISFGQDVPTTG----------LLILAGGVTTVPLVL 230

Query: 234 FTGAAARLKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLK 293
           F  AA RL L+TLG  QY+ P+L FL  V++ GE  +  + ++F  IW  L++F+ D   
Sbjct: 231 FATAAQRLPLATLGLLQYLAPTLQFLCGVVLLGETLSKGQMLSFGLIWLGLILFASDSYA 290

Query: 294 AGHAARRA 301
           A    R A
Sbjct: 291 AARRNRLA 298