Pairwise Alignments

Query, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., putative chloramphenical resistance permease RarD from Alteromonas macleodii MIT1002

 Score =  315 bits (807), Expect = 8e-91
 Identities = 159/300 (53%), Positives = 207/300 (69%), Gaps = 1/300 (0%)

Query: 3   MTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGR 62
           M+     A+ G++ AI+AY+MWG+AP+YFK L  + A EIL HRV+WS VLL  LI   +
Sbjct: 1   MSKQASAAQVGVICAIAAYSMWGVAPVYFKQLMVLPAAEILMHRVIWSVVLLVGLIAALK 60

Query: 63  RWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGM 122
           +W  V   +   R   +L V  LL+G NWL+FIW+IN +H+LDASLGYYINPL+NV LG 
Sbjct: 61  QWPKVGAALRNKRVMQILFVAGLLLGANWLLFIWAINNDHILDASLGYYINPLINVFLGR 120

Query: 123 LFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQTG 182
           LFLGERLR LQ  AV LA IGV I +  +G VP +A+ LA SF  YGLLRK++ VD+  G
Sbjct: 121 LFLGERLRNLQRVAVGLAVIGVAILIFSYGHVPWIALVLAGSFSVYGLLRKQVAVDSLPG 180

Query: 183 LFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAARLK 242
           LF+ETL + P A IY ++   +  S++  N   LN L++ AG+VTT PLLCFT AA R+ 
Sbjct: 181 LFIETLMLSPFAIIYWVFFG-SEYSNLFNNDATLNTLILAAGIVTTAPLLCFTAAARRIM 239

Query: 243 LSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR 302
            STLGFFQYIGP+LMF+LAV +YGE     + +TF F+W AL++FS D L    + R+AR
Sbjct: 240 YSTLGFFQYIGPTLMFILAVYLYGEPLEESRLVTFGFVWFALILFSADSLVNYRSQRKAR 299