Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., HTH-type transcriptional activator RhaS from Pseudomonas sp. RS175

 Score =  116 bits (290), Expect = 6e-31
 Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 9   YRPSAYPAISLIE-ADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMS 67
           +R +A P I     AD R+  + RH H    IG IT G   + H+ +  +V  G VVLM+
Sbjct: 13  WRDAALPFIEARAIADGRKVCYSRHSHDHFSIGAITAGCSTYLHEQSALRVESGTVVLMN 72

Query: 68  PDELHDGHAHSNTGYQVQVFSIEPEWL---QQTLEANQIEQVIGFEQLIVQDPTLFHSLQ 124
           P ++H  +   +  +   +  ++ +WL   QQ +  +Q     GF     +D  LF +LQ
Sbjct: 73  PGDVHACNPIDDQPWSYVMLYVDTQWLRDLQQRIGFDQTTDFQGFATTHSRDAELFAALQ 132

Query: 125 QLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQH-NLALLKEWVLSQLD 183
            L+ LL  + +    K       F  L +R +   +P     G H  L    +++     
Sbjct: 133 ALYGLLVDERIDIRHKQAAAEAFFTDLQQRLNPAGRPD---RGSHPGLMRAAQFIHDHCT 189

Query: 184 QPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAYQV 243
           + +RLE +    QLSP+   R FK   G+TP+A+L   R++ A + L+ G+   DVA   
Sbjct: 190 EALRLEDICSAAQLSPSYLSRAFKRHYGMTPHAFLVNRRIQFARRQLREGRLIADVALDS 249

Query: 244 GFYDQAHFSKAFKATYGLSP 263
           GF DQAHF +AFK     +P
Sbjct: 250 GFADQAHFQRAFKQHLAATP 269