Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., HTH-type transcriptional activator RhaS from Escherichia coli ECRC99

 Score = 72.8 bits (177), Expect = 8e-18
 Identities = 81/278 (29%), Positives = 120/278 (43%), Gaps = 27/278 (9%)

Query: 1   MVSMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQ 60
           M  + +V++ PS   +++ IE    Q  F  H+H    I ++  G       G  + +  
Sbjct: 1   MTVLHSVDFFPSGNASVA-IEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTI-T 58

Query: 61  GGVVLMSPDELHDGHAHSNTGYQ--VQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPT 118
           GG V    D  HD H + +T       V    P+  Q     NQ+      ++L  Q P+
Sbjct: 59  GGTVCFVRD--HDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLP----QELDGQYPS 112

Query: 119 LF---HS-LQQLHHLLRQ--------DNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPL 166
            +   HS LQQ+  L+ Q        D  S  +++ L  Q    LL R S L++      
Sbjct: 113 HWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLL--LLLRKSSLQENLENSA 170

Query: 167 GQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQA 226
            + NL L   W+       +  + +A    LS     R  K QTGLTP  +L RLRL +A
Sbjct: 171 SRLNLLLA--WLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKA 228

Query: 227 MKLLQSGKPG-TDVAYQVGFYDQAHFSKAFKATYGLSP 263
             LL+  +   TD+AY  GF D  HFS  F+  +  SP
Sbjct: 229 RHLLRHSEASVTDIAYHCGFSDSNHFSTLFRREFNWSP 266