Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., HTH-type transcriptional activator RhaS from Azospirillum sp. SherDot2

 Score =  103 bits (258), Expect = 3e-27
 Identities = 79/268 (29%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 5   DTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVV 64
           D V  R  A   I  I A +R  A++ H H ++ +G+  QGVQ F  +   H    G V+
Sbjct: 14  DWVAVRRDAETGIETIRAHFRGHAYDLHDHDELLVGVTEQGVQAFRCRRRLHTSVPGRVI 73

Query: 65  LMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQ------IEQVIGFEQLIVQDPT 118
           L+ P E HDGH+    G+   +  +    L    EA +          +GF   +  DP 
Sbjct: 74  LIEPGEAHDGHSPGEDGFTYAMLYLPVPLLTARSEALRSLTPRGTGLPLGFRDTLADDPG 133

Query: 119 LFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVK-PLGQHNLALL-KE 176
           L  +++     L Q    +LA+D    +  A L+    +L  P  + P      ALL ++
Sbjct: 134 LAATIRSAFLALHQRE-GRLARDLSLDRLAARLV---GHLAPPEERRPQRPDRAALLVRD 189

Query: 177 WVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPG 236
            + +++ + + L+ L+    +   +  R F+A  GL+P+A+L RLRL  A + L  G+  
Sbjct: 190 LLHARMAEDVGLDALSAAAGVDRFRLNRGFRAAFGLSPHAYLVRLRLRTARRRLADGEAP 249

Query: 237 TDVAYQVGFYDQAHFSKAFKATYGLSPS 264
             VA +VGF DQ+H  + F+  YGL+P+
Sbjct: 250 ALVAAEVGFADQSHLGRWFRRAYGLTPA 277