Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score =  499 bits (1284), Expect = e-145
 Identities = 284/641 (44%), Positives = 386/641 (60%), Gaps = 24/641 (3%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           L GLN +QREAV      LL+LAGAG+GKTRVL  R+A +++   A P  ++ VTFTNKA
Sbjct: 30  LSGLNPEQREAVETLEGPLLVLAGAGTGKTRVLTARVAHILASGRAFPSQILVVTFTNKA 89

Query: 68  AAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EM+ RI  ++     GM W GTFH I  RILR H+    L   F I+D+DDQ RLLK+
Sbjct: 90  AREMKDRIHGMVGDQIEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLKQ 149

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLK---LYTAYQEACDR 183
           L+ A N+D+K+WPAR +A  I+  K+ GL P  +   +       K   LY AYQ     
Sbjct: 150 LLAAENIDEKRWPARLLAATIDGWKNRGLSPKDVPPGEGAVFANGKGGMLYAAYQARLKA 209

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNV 243
              VDF ++LL  + L R N  +   Y  RFK++LVDE+QDTN  QY WLR++A    NV
Sbjct: 210 LNAVDFGDLLLEGIRLFRENPDVLAEYHRRFKYLLVDEYQDTNVAQYLWLRLLAQGSKNV 269

Query: 244 MIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
             VGDDDQSIYGWRGA V+NI +F  +FP    IRLE+NYRST  IL ++  LIA+N  R
Sbjct: 270 CCVGDDDQSIYGWRGAEVDNILRFESDFPGAKVIRLERNYRSTGHILASAAHLIAHNEGR 329

Query: 304 MGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVL 363
           +GK L+++G  GE +SV  A++  +EAR V  +I+  Q  G  L++ AIL R + Q R  
Sbjct: 330 LGKTLFSEGDEGERVSVTGAWDSGEEARAVGEEIEALQRAGHRLSEIAILVRASFQMREF 389

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E+  +   + YR+ GG RF+ER EI+DAL+YLR +N+  DD AFER++N P RG+GD T+
Sbjct: 390 EDRFVTLGMPYRVIGGPRFYERAEIRDALAYLRCVNSTADDLAFERIVNVPKRGIGDATV 449

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDH 483
           + I   AR  G  L +A+  L   + L  +    L   ++      E+   M    + + 
Sbjct: 450 KQIHDVARAAGVPLQEAARVLTESEELKPKVRGTLRGLIQAFERWREQARTMSHTEIAEI 509

Query: 484 AVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL--- 540
            +  SG  EM+Q+++  ++  R+ENL+ELV +   FE          L  FL H +L   
Sbjct: 510 VLDESGYTEMWQKDRSAEAAGRLENLKELVRSMEPFES---------LPGFLEHISLVMD 560

Query: 541 -EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGR--LEEERR 597
            + G G     +DAVQ+MTLHSAKGLEF  VF+ G EEG+FP Q + +E G+  LEEERR
Sbjct: 561 VDNGAG-----EDAVQVMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEQGKAGLEEERR 615

Query: 598 LCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
           L YVG+TRA     I +A  RR++G      PSRF+ ELP+
Sbjct: 616 LAYVGITRARASARIWFASNRRIHGMWNSTVPSRFLDELPD 656



 Score = 29.3 bits (64), Expect = 8e-04
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 663 VVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
           V   S + + F  G RV H KFG G I   +G    +++ V F+  G K ++  +
Sbjct: 750 VASSSASSSAFKRGERVFHIKFGYGEITGIDG----NKLTVQFDKAGEKRVLETF 800