Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

 Score =  368 bits (945), Expect = e-106
 Identities = 245/655 (37%), Positives = 358/655 (54%), Gaps = 20/655 (3%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN +Q+EAV      LL+LAGAGSGKT V+  +IA L+         ++A+TFTNKAA E
Sbjct: 4   LNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAARE 63

Query: 71  MRGRIEELMHG-TASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+  L+ G    G+   TFH +   I+R  +        F I D  D + L+  +++
Sbjct: 64  MKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKSLMTDIMQ 123

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGLV 187
                D      ++   I   K++ + P     NA +P  QT   +YT YQ        V
Sbjct: 124 KEYAGDDG--VDEIKNMIGAWKNDLILPAQALENARNPKEQTAAIVYTHYQRTLKAFNAV 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L  ++L   +  I E +Q + +++LVDE+QDTNA QY  ++M+ G ++   +VG
Sbjct: 182 DFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGAR EN+     ++PS+  + LEQNYRST  IL  +N LI+NN     KQ
Sbjct: 242 DDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFEKQ 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQ-EQGGTLTDCAILYRNNAQSRVLEEA 366
           LW++   G+ I V    NE  EA  V  +I           +D AILYR N Q++++E  
Sbjct: 302 LWSEMGHGDEIRVIRCRNEDAEAERVAVEILSLHLRTDRPYSDFAILYRGNYQAKLIELK 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L    + YR+ GG  FF RQE+KD ++Y RLI N +DD AF RVIN P R +G  TLE +
Sbjct: 362 LQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRREIGSTTLEKL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEE--GIDMPLHVLTDHA 484
              A +R  +++ A+  +   + L  R    L+RF   ++ + E+  G D P+  L    
Sbjct: 422 GNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDKVREQCAGED-PISALRSMV 480

Query: 485 VKTSGLLEMYQQEKGEKSKA---RIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE 541
           +      E + +      KA   R+ N+  L+ A +   + +E  EMT+  A       +
Sbjct: 481 MDID--YENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGEMTVEDAIGKLVLRD 538

Query: 542 AGEGQADEHDDA--VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC 599
             E Q +E D A  VQ+MTLH++KGLEFP VF++G+EE + P + S+ EA  +EEERRL 
Sbjct: 539 MLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHR-SSIEADTIEEERRLA 597

Query: 600 YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPT 654
           YVG+TRA Q L  T+A  R+ YG+     PSRF+ ELP    D++  +     PT
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPP---DDLAWEGNDDTPT 649